Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 852,164 | G→C | 7.5% | A315P (GCG→CCG) ‡ | hemA → | glutamyl‑tRNA reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 852,164 | 0 | G | C | 7.5% | 166.9 / 4.1 | 53 | A315P (GCG→CCG) ‡ | hemA | glutamyl‑tRNA reductase |
Reads supporting (aligned to +/- strand): ref base G (23/26); new base C (2/2); total (25/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.29e-01 |
ACAGCGCCGACACAAGCCCATCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGCGACGAAGAACTGCAAAAGGCCTTGCGCCT > NC_002947/852016‑852312 | aCAGCGCCGACACAAGCCCATCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGgcg > 8:230492/1‑149 (MQ=255) aGCGCCGACACAAGCCCATCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGcgcg < 7:267483/149‑1 (MQ=255) aGCGCCGACACAAGCCCATCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGcgcg < 1:331104/149‑1 (MQ=255) gcgcCGACACAAGCCCATCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCgg < 1:318153/149‑1 (MQ=255) ccATCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGaa < 1:115555/149‑1 (MQ=255) ccATCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGaa < 3:327438/149‑1 (MQ=255) cATCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCg > 5:89262/1‑146 (MQ=255) cATCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGaa < 6:89262/148‑1 (MQ=255) aTCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGaa > 2:328285/1‑147 (MQ=255) cATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTg < 8:331868/148‑1 (MQ=255) cATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTg < 7:276118/148‑1 (MQ=255) cATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTg < 1:328285/148‑1 (MQ=255) aTGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCTGGGCCGCGCCCTggcggc < 2:248916/137‑1 (MQ=255) aTGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCCAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCTGGGCCGCGCCCTggcggc > 1:248916/1‑137 (MQ=255) aCATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGATCTGGTATACGTg > 3:221603/1‑149 (MQ=255) aCATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTg > 5:17077/1‑149 (MQ=255) cTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGcc > 5:63284/1‑149 (MQ=255) gTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCg > 2:3196/1‑148 (MQ=255) atgtCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCAtg < 4:230484/146‑1 (MQ=255) tatCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGcc > 7:308120/1‑112 (MQ=255) tatCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGcc < 8:308120/112‑1 (MQ=255) tCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCAtgctg > 3:55254/1‑149 (MQ=255) gAAACAGAAGTCGGCGAGCTGGGTGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGctgcg > 2:306269/1‑149 (MQ=255) aCCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCa < 5:82796/139‑1 (MQ=255) aCCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCa > 6:82796/1‑139 (MQ=255) cGAGCTGGATGATGTCACCCTGTACCCCGTCGACGACCTCCACGATGTAGTGGCGTAAAACCTCAAGCGCCGCCAGGGCGCGGCCCAGGCGGCCTAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTgg < 7:292168/149‑1 (MQ=255) gAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGc < 6:17077/149‑1 (MQ=255) gCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTg > 5:146689/1‑149 (MQ=255) ggtgatgTCTACCTGTACACCGTCGACGAACTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCa < 1:306269/145‑1 (MQ=255) gatgatGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCTGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACGGGCTGCa < 7:230492/147‑1 (MQ=255) gatgatGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGt > 4:36840/1‑149 (MQ=255) gatgTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTg < 6:62770/142‑1 (MQ=255) gatgTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTg > 5:62770/1‑142 (MQ=255) tgTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGAc < 6:63284/148‑1 (MQ=255) tACCTGTACACCGTCGACGACCCGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCt > 2:96254/1‑149 (MQ=255) tACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAgg < 4:55254/147‑1 (MQ=255) gacgacCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAg > 1:226218/1‑124 (MQ=255) gacgacCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAg < 2:226218/124‑1 (MQ=255) gacCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGc > 2:208417/1‑148 (MQ=255) cTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAg > 1:313359/1‑149 (MQ=255) cACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGt > 1:155407/1‑147 (MQ=255) aCGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAg < 1:208417/149‑1 (MQ=255) gATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCT‑AGGGCCTATCGCCAGCAAAGTGAgcgc > 8:125305/1‑149 (MQ=255) gTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTcg < 1:3196/149‑1 (MQ=255) gCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGcga < 2:155407/149‑1 (MQ=255) gCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGcga > 5:103845/1‑149 (MQ=255) ggAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAggg < 6:282260/116‑1 (MQ=255) ggAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAggg > 5:282260/1‑116 (MQ=255) aaaaCCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGCGACgaa < 3:36840/149‑1 (MQ=255) aaaCCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGCGACgaag < 6:103845/149‑1 (MQ=255) tCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCa > 8:173783/1‑105 (MQ=255) tCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCa < 7:173783/105‑1 (MQ=255) gagCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCT‑AGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGCGACGAAGAACTGCaaaa < 7:125305/149‑1 (MQ=255) ccgccTGGGCCGCGCCCTGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGcgac < 7:62327/133‑1 (MQ=255) ccgccTGGGCCGCGCCCTGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGcgac > 8:62327/1‑133 (MQ=255) ggCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGCGACGAAGAACTGCAAAAGGCCTTgcg > 4:259716/1‑149 (MQ=255) gcgcGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGCGACGAAGAACTGCAAAAGGCCTTgcgc < 2:253305/149‑1 (MQ=255) gcgGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGCGACGAAGAACTGCAAAAGGCCTTGCGCct > 6:319005/1‑149 (MQ=255) | ACAGCGCCGACACAAGCCCATCTTCATGGTCGACATCGCTGTACCTCGCGATATCGAAACCGAAGTCGGCGAGCTGGATGATGTCTACCTGTACACCGTCGACGACCTGCACGATGTAGTGGCGGAAAACCTCAAGAGCCGCCAGGGCGCGGCCCAGGCGGCCGAAGAGCTGGTATCCGTGGGCGCCGAAGACTTCATGCTGCGCCTGCGCGAACTGGCTGCAGTGGACGTGCTCAGGGCCTATCGCCAGCAAAGTGAGCGCCTTCGCGACGAAGAACTGCAAAAGGCCTTGCGCCT > NC_002947/852016‑852312 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |