Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 900,535 | C→G | 11.1% | intergenic (+27/+18) | PP_0784 → / ← cysZ | hypothetical protein/sulfate transport protein CysZ |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 900,535 | 0 | C | G | 11.1% | 141.4 / 8.4 | 53 | intergenic (+27/+18) | PP_0784/cysZ | hypothetical protein/sulfate transport protein CysZ |
Reads supporting (aligned to +/- strand): ref base C (26/21); new base G (4/2); total (30/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.87e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 |
CAGCCTTGGCGTTCGGCGGGTCAAGCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCAGGCTCTGCCAGCGCTT > NC_002947/900387‑900681 | cAGCCTTGGCGTTCGGCGGGTCAAGCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGccc > 4:225699/1‑149 (MQ=255) cAGCCTTGGCGTTCGGCGGGTCAAGCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGCGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGccc > 3:236785/1‑149 (MQ=255) ggcggGTCAAGCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCt > 4:172701/1‑149 (MQ=255) gTCAAGCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTc < 7:261599/149‑1 (MQ=255) tCAAGCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGACCCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCtt > 6:143856/1‑147 (MQ=255) acAAGCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGGTTTCTCAGAATGCCACCCTCGAACCCTACCGTTACTCCGCCTTCTAAACAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCG‑CGCTCCtt > 4:284387/2‑147 (MQ=255) aGCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGGACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTc < 1:48442/141‑1 (MQ=255) aGCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGGACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTc > 2:48442/1‑141 (MQ=255) gCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCATTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGCGCTGCCCTGCAGCCCCT‑CGCTCCTTCAgctc > 1:262502/1‑149 (MQ=255) aCCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAgctccgc > 2:35880/1‑149 (MQ=255) gCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGc > 8:136761/1‑123 (MQ=255) aCCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCAcc < 3:225699/149‑1 (MQ=255) aCCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCAc < 3:172701/148‑1 (MQ=255) ccTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAgctccgctc > 1:329869/1‑141 (MQ=255) cTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCAcc > 5:125392/1‑147 (MQ=255) cTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCa < 6:347079/149‑1 (MQ=255) cTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCAGGGCAGCCCCtttt < 4:90959/124‑4 (MQ=255) cTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCAGGGCAGCCCCtttt > 3:90959/1‑121 (MQ=255) tCGTGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCTAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTccc < 6:125173/141‑1 (MQ=255) tCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCgacatcg > 5:125173/1‑142 (MQ=255) agaAGGTTAAGGCAGCGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGaac < 4:236785/149‑1 (MQ=255) aaGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTg < 8:254108/107‑1 (MQ=255) gtttAAGGAAGTGTAACATCTAATACTGCTTTCTCAGATTGCCACCCTCTAACCCTACAGTTTCTCCTACTTCTAAAAAGAAATCCCCAAAAAGGGGCTCCCGTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGaacaac < 3:321753/146‑1 (MQ=255) gCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGCGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGcccc < 2:262502/149‑1 (MQ=255) aaCATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCTAGTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGATCGGCTCCGGCACCCAGAACAACTTAGCCACGGcacat > 8:88289/1‑145 (MQ=255) tCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTgccg > 7:14326/1‑149 (MQ=255) aTACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCgg < 2:111957/149‑1 (MQ=255) tctcAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCAtcatca < 6:284204/148‑1 (MQ=255) tcAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCa > 8:193416/1‑149 (MQ=255) ttGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGtt > 1:221269/1‑148 (MQ=255) ccACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCAc < 8:14326/148‑1 (MQ=255) ccTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGTCATCATCAGCACGTTCACGCCTGGAatcatc < 1:35880/149‑1 (MQ=255) ccTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAatcat > 4:127327/1‑148 (MQ=255) cTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAAtcatca < 7:88289/149‑1 (MQ=255) tACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAg > 7:212061/1‑149 (MQ=255) gTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAgcgc > 8:149634/1‑148 (MQ=255) tcCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCagg > 2:124479/1‑147 (MQ=255) gACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCaggtaggt > 1:150682/1‑149 (MQ=255) ttCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCTGCGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGa > 1:68140/1‑149 (MQ=255) ttCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAAtcatca < 5:125993/133‑1 (MQ=255) ttCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAAtcatca > 6:125993/1‑133 (MQ=255) aaaaGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATgccgc > 1:23836/1‑149 (MQ=255) aaaaGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATgccgc < 3:127327/149‑1 (MQ=255) aaaaGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCCCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGCAATCATCAGCGCCAGCTAGGAGATgccgc > 4:216238/1‑149 (MQ=255) aaaaGCAATCCGAAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATgccgc < 3:176710/149‑1 (MQ=255) aaTCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGcatcat > 7:267547/1‑96 (MQ=255) aaTCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGcatcat < 8:267547/96‑1 (MQ=255) cGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCa < 7:149634/148‑1 (MQ=255) gCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCAgg > 5:153432/1‑149 (MQ=255) gCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCAgg > 2:113044/1‑149 (MQ=255) cAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCAGGc < 2:23836/149‑1 (MQ=255) aaaaaGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAGAGCCTGGGct < 8:212061/149‑1 (MQ=255) gcgaGGGGCTGCAGGGCAGCCCCT‑TGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCAGGctc > 7:242973/4‑149 (MQ=255) gcgaGGGGCTGCAGGGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCGGGACTCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCAGGcgc > 4:28945/4‑147 (MQ=255) aGGGGCTGCAGGGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCAGGCTCTGc > 3:108043/1‑149 (MQ=255) cccTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCAGGCTCTGCCAGCGCtt < 1:124479/149‑1 (MQ=255) cccTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCAGGCTCTGCCAGCGCtt < 1:113044/149‑1 (MQ=255) | CAGCCTTGGCGTTCGGCGGGTCAAGCGACCTTGCTAACCTCGAGAAGGTTAAGGCAGTGGAACATCTAATACTGCTTTCTCAGATTGCCACCCTCGAACCCTACAGTTTCTCCGACTTCTAAAAAGCAATCCGCAAAAAGGGGCTGCCCTGCAGCCCCT‑CGCTCCTTCAGCTCCGCTCCCGCACCCAGAACAACGTAGCCCCGGCCACTGCCGCCGGCATCATCAGCACGTTCACGCCTGGAATCATCAGCGCCAGGTAGGTGATGCCGCCAAAGCCCAGGCTCTGCCAGCGCTT > NC_002947/900387‑900681 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |