Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 133,207 | G→C | 7.0% | K210N (AAG→AAC) ‡ | dsbA → | thiol:disulfide interchange protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 133,207 | 0 | G | C | 7.0% | 181.9 / 4.3 | 57 | K210N (AAG→AAC) ‡ | dsbA | thiol:disulfide interchange protein |
Reads supporting (aligned to +/- strand): ref base G (25/28); new base C (2/2); total (27/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 |
CAAGGAATTGGCGAAGAAGTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGGCTGCTCAGTTTCAACATCCAGGTGGGCATCA > NC_002947/133060‑133355 | cAAGGAATTGGCGAAGAAGTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAg > 2:178800/1‑148 (MQ=255) aaGGAATTGGCGAAGAAGTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAg > 5:93912/1‑147 (MQ=255) aGGAATTGGCGAAGAAGTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAg > 2:124963/1‑149 (MQ=255) aTTGGCGAAGAAGTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAggcgg < 1:124963/149‑1 (MQ=255) gaagaaGTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTGCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCAc < 5:189985/149‑1 (MQ=255) agaagTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCAccc < 6:268830/149‑1 (MQ=255) gaagTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCa > 3:111536/1‑149 (MQ=255) gTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGc < 1:30863/149‑1 (MQ=255) gTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGc < 8:104240/149‑1 (MQ=255) gTATCAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGc < 2:245221/149‑1 (MQ=255) agaTCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCg < 2:175623/148‑1 (MQ=255) gaTCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCt > 7:245441/1‑149 (MQ=255) aTCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCtt < 6:93912/149‑1 (MQ=255) aCCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCtt > 2:284128/1‑146 (MQ=255) ccGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCaga < 8:128726/149‑1 (MQ=255) aCCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCCGCCTACTTGgcagcgc > 3:134841/1‑121 (MQ=255) aCCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCCGCCTACTTGgcagcgc < 4:140022/122‑2 (MQ=255) aCCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCCGCCTACTTGgcagcgc < 4:134841/122‑2 (MQ=255) aCCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCCGCCTACTTGgcagcgc > 3:140022/1‑121 (MQ=255) cGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGt > 3:254238/1‑149 (MQ=255) gAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTg < 1:178800/149‑1 (MQ=255) cTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCAt > 8:253163/1‑149 (MQ=255) gtcgtcAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTgg < 4:254238/149‑1 (MQ=255) cAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTg > 8:123050/1‑148 (MQ=255) aCGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCAc < 7:253163/149‑1 (MQ=255) aaGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGcc > 7:66576/1‑149 (MQ=255) aaGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGcc < 8:66576/149‑1 (MQ=255) aGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCg > 8:157104/1‑149 (MQ=255) aCCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCaga > 5:358217/1‑116 (MQ=255) ccGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGTCCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAgg < 1:284128/149‑1 (MQ=255) ccGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAgg < 2:333747/149‑1 (MQ=255) ttCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCaa > 1:144367/1‑149 (MQ=255) tCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAgacggc > 5:33224/1‑143 (MQ=255) cGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCaa < 7:289850/147‑1 (MQ=255) ccTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACAAGc < 7:157104/149‑1 (MQ=255) ggACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGcccc > 6:305339/1‑149 (MQ=255) aCCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCgg < 4:111536/149‑1 (MQ=255) gAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCt > 2:227630/1‑149 (MQ=255) aaGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTg > 7:335351/1‑149 (MQ=255) gCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGccc > 5:178849/1‑149 (MQ=255) aaTGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCAc < 1:68827/120‑1 (MQ=255) aaTGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCAc > 2:68827/1‑120 (MQ=255) gCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCAcc < 6:196501/115‑1 (MQ=255) gCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCAcc > 5:196501/1‑115 (MQ=255) aCCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCgg < 2:144367/149‑1 (MQ=255) cAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGa > 5:165440/1‑131 (MQ=255) cAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGa < 6:165440/131‑1 (MQ=255) aTCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCCTCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGc < 7:43867/139‑1 (MQ=255) aTCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGc > 8:43867/1‑139 (MQ=255) aCAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGGCTGCTCa < 3:32360/144‑1 (MQ=255) aCAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGGCTGCTCa > 4:32360/1‑144 (MQ=255) aaGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCt > 7:176870/1‑113 (MQ=255) aaGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCt < 8:176870/113‑1 (MQ=255) aaGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGGCTGCTCAGTTTCaa < 8:335351/149‑1 (MQ=255) gcTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCAACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGGCTGCTCAGTTTCAACATCCAGGt < 5:305339/149‑1 (MQ=255) ccAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGgctgc < 4:242957/126‑1 (MQ=255) ccAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGgctgc > 3:242957/1‑126 (MQ=255) ccAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGGCTGCTCAGTTTCAACATCCAGGTggg > 5:147325/1‑148 (MQ=255) ccAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGGCTGCTCAGTTTCAACATCCAGGTggg > 6:104783/1‑148 (MQ=255) gTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGGCTGCTCAGTTTCAACATCCAGGTGGGCATCa < 6:178849/149‑1 (MQ=255) | CAAGGAATTGGCGAAGAAGTATGAGATCACCGGCGTACCGAGCCTGGTCGTCAACGGCAAGTACCGCTTCGACCTGGGGACTGCCGGCGGACCGGAAGGCGTGCTGAATGTCGCCGACCAGCTGATCGACAAGGAGCGCGCTGCCAAGTAGGCGGCGTCACCCATGCCCCGCTTCAGAGCTACGCGTGGCATTGGCCTGCACGAGCCGCAGGTCAACGAGCATCACCTGCAGGCCCCGGGCCTGCCCGAGGATGGCCGTCTGCGGCTGCTCAGTTTCAACATCCAGGTGGGCATCA > NC_002947/133060‑133355 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |