Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,040,591 A→T 8.0% intergenic (+27/+15) PP_0899 → / ← PP_0900 ferredoxin reductase/PAP2 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,040,5910AT 8.0% 141.2 / 2.7 50intergenic (+27/+15)PP_0899/PP_0900ferredoxin reductase/PAP2 family protein
Reads supporting (aligned to +/- strand):  ref base A (23/23);  new base T (2/2);  total (25/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.43e-01

GCTGCTGTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAGTGCGCCCC  >  NC_002947/1040456‑1040737
                                                                                                                                       |                                                                                                                                                  
gctgctGTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCTTTGCGGCCCttc                                                                                                                                        >  1:308902/1‑148 (MQ=255)
gctgctGTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCTTTGCGGCCCttc                                                                                                                                        <  2:308902/148‑1 (MQ=255)
  tgctgTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCTTTGCGGCCCttc                                                                                                                                        >  8:60907/1‑146 (MQ=255)
  tgctgTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCTTTGCGGCCCttc                                                                                                                                        <  7:60907/146‑1 (MQ=255)
      gtgtgGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGc                                                                                                                                             >  6:300491/1‑137 (MQ=255)
      gtgtgGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGc                                                                                                                                             <  5:300491/137‑1 (MQ=255)
                             aGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGc                                                                                                          >  2:3016/1‑149 (MQ=255)
                                      cccGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGcc                                                                                                 >  8:2784/1‑149 (MQ=255)
                                          aCGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGc                                                                                                                                             <  6:295845/101‑1 (MQ=255)
                                          aCGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGc                                                                                                                                             >  5:295845/1‑101 (MQ=255)
                                                 ttCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACg                                                                                                             <  8:41524/126‑1 (MQ=255)
                                                   cATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGa                                                                                     <  5:253804/148‑1 (MQ=255)
                                                           gggTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAAc                                                                             >  7:290021/1‑148 (MQ=255)
                                                                 cgcgGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTaa                                                                      >  4:8240/1‑149 (MQ=255)
                                                                  gcgGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAAt                                                                     <  1:3016/149‑1 (MQ=255)
                                                                  gcgGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAAt                                                                     <  8:290021/149‑1 (MQ=255)
                                                                       gACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGAc                                                                <  3:8240/149‑1 (MQ=255)
                                                                         cAGGTGTTTGCTGATTTGTTCGTCGAGCTTGCCTGAGTAGCATTTGAAGTGCGATGGGCCGCAAAGCGGCCCCTCTTTCTTGCGGCGCTGCGCTCGGCGACGTGCACCTCGGCCAGCCCCCGCCGATAGAGAAGCAGGTAATACGAccc                                                              <  6:196861/149‑1 (MQ=255)
                                                                         cAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGAccc                                                              >  4:108273/1‑149 (MQ=255)
                                                                          aGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGAccc                                                              >  6:233111/1‑148 (MQ=255)
                                                                            gtgtTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTc                                                                                                                                    >  4:196506/1‑76 (MQ=255)
                                                                              ggttGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATAGCACCCCaaac                                                         >  4:113656/3‑147 (MQ=255)
                                                                                  gCTGATGTTTTCGTCGAGCATGCCTTAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTTCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGTGAACCAGGTAATACGACCCCAATCCGa                                                      <  7:221595/148‑1 (MQ=255)
                                                                                  gCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGa                                                      <  7:2784/148‑1 (MQ=255)
                                                                                  gCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGAt                                                     >  3:306405/1‑149 (MQ=255)
                                                                                    tGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCccgcc                                                                                       <  4:214635/113‑1 (MQ=255)
                                                                                    tGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCccgcc                                                                                       >  3:214635/1‑113 (MQ=255)
                                                                                    tGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGa                                                      <  8:225417/146‑1 (MQ=255)
                                                                                    tGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGa                                                      >  7:225417/1‑146 (MQ=255)
                                                                                    tGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATc                                                    >  1:5240/1‑148 (MQ=255)
                                                                                     gATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCaa                                                  >  4:123154/1‑149 (MQ=255)
                                                                                        gtgtTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGCCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCCGCCGCCGCCGATAGAGAACGAGGTAAAACGACCCCAATCCGATCagc                                                 >  4:218906/1‑145 (MQ=255)
                                                                                         tgtTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACcag                                              <  4:306405/149‑1 (MQ=255)
                                                                                                  aGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGATCCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACt                                     <  3:184113/149‑1 (MQ=255)
                                                                                                              tAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATaga                                                                                 <  6:34410/93‑1 (MQ=255)
                                                                                                              tAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATaga                                                                                 >  5:34410/1‑93 (MQ=255)
                                                                                                                   tttGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGa                                                                 >  7:273457/1‑104 (MQ=255)
                                                                                                                   tttGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGa                                                                 <  8:273457/104‑1 (MQ=255)
                                                                                                                     tGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGc                   <  3:113656/148‑1 (MQ=255)
                                                                                                                         gTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAg              <  3:123154/149‑1 (MQ=255)
                                                                                                                          tGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAgg             <  5:233111/149‑1 (MQ=255)
                                                                                                                            cGAAGGGCCGCAAAGCGGCCCCTCTTTCATGTGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGcc                                  <  7:101940/126‑1 (MQ=255)
                                                                                                                            cGAAGGGCCGCAAAGCGGCCCCTCTTTCATGTGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGcc                                  >  6:292689/1‑126 (MQ=255)
                                                                                                                            cGAAGGGCCGCAAAGCGGCCCCTCTTTCATGTGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGcc                                  >  8:101940/1‑126 (MQ=255)
                                                                                                                            cGAAGGGCCGCAAAGCGGCCCCTCTTTCATGTGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGcc                                  <  5:292689/126‑1 (MQ=255)
                                                                                                                            cGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGaa           <  2:5240/149‑1 (MQ=255)
                                                                                                                              aaGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAGt         >  2:254330/1‑149 (MQ=255)
                                                                                                                                 ggCCGCAAAGCGGCCCCTCTTTCTTGCGGCGCTGGGCTAGGCGACGTTCACGTCGTCCAGCCCCCTCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTc                               <  6:282517/124‑1 (MQ=255)
                                                                                                                                    cGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAGTGCGccc   >  2:50226/1‑149 (MQ=255)
                                                                                                                                     gCAAAGCGGCCCCTCTTTCATGCGGCGCTGGGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAGTGCGcccc  >  1:28046/1‑149 (MQ=255)
                                                                                                                                       |                                                                                                                                                  
GCTGCTGTGTGGGGCACCGGGGAGTGTCGAGCGGTTTGCCCGACGCATGTTCATGGCAGGGGTACCGCGGGGACAGGTGTTTGCTGATGTGTTCGTCGAGCATGCCTGAGTAGCATTTGAAGTGCGAAGGGCCGCAAAGCGGCCCCTCTTTCATGCGGCGCTGCGCTCGGCGACGGGCACCTCGGCCAGCCCCCGCCGATAGAGAACCAGGTAATACGACCCCAATCCGATCAACCAGCAGAACACTGCCGTCCACACATTGTGCGACAGGAAGTGCGCCCC  >  NC_002947/1040456‑1040737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑