Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,168,701 | A→T | 7.0% | intergenic (+218/+35) | eda → / ← leuA | KHG/KDPG aldolase/2‑isopropylmalate synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,168,701 | 0 | A | T | 7.0% | 169.6 / 2.5 | 57 | intergenic (+218/+35) | eda/leuA | KHG/KDPG aldolase/2‑isopropylmalate synthase |
Reads supporting (aligned to +/- strand): ref base A (29/24); new base T (2/2); total (31/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
GTTGTGCTGGCCCTTTCGCGGGTAGACCCGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATACCCACGCCATGTACCGGGCGGCC > NC_002947/1168558‑1168849 | gTTGTGCTGGCCCTTTCGCGGGTAGACCCGCTCCTACGCACCGCTCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGGTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGAt > 5:70488/1‑149 (MQ=255) gCTGGCCCTTTCGCGGGTAGACCCGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAAGAAAAAAAGCCCGCATCGTTTGATGCggg < 1:196968/149‑1 (MQ=37) gCCCTTTCGCGGGTAGACCCGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCttt > 4:146007/1‑149 (MQ=255) ccTTTCGCGGGTAGACCCGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGGGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGc < 4:313310/144‑1 (MQ=255) ccTTTCGCGGGTAGACCCGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGGGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGc > 3:313310/1‑144 (MQ=255) cTTTCGCGGGTAGACCCGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCGTTTGATGCggg > 4:164490/1‑142 (MQ=255) cTTTCGCGGGTAGACCCGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCGTTTGATGCggg < 3:164490/142‑1 (MQ=255) gggTAGACCCGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCt > 4:48520/1‑148 (MQ=255) ccGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATttcagg > 7:169936/1‑149 (MQ=255) ccGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATttcag < 8:89117/148‑1 (MQ=255) ccGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATttcag > 7:89117/1‑148 (MQ=255) cGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATttcaggc < 8:169936/149‑1 (MQ=255) tGCGTTGGGTACACTCCGGGGTTTTGACACAGGCTTTAGTTGGAGGGGGTTTACCCGCGAATGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCt < 2:280281/148‑1 (MQ=255) cgttGGGAACACACCGGGTTTTGGACACAGGCCTTAGTAGCAGCGGTTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCtt < 7:274727/139‑1 (MQ=255) cGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGTAGCGGGTTTACCCGCTAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTc < 5:284636/148‑1 (MQ=255) acacacCGGGTGTTGGCCACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCt < 4:338969/149‑1 (MQ=255) acacacCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCGCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGc > 5:61048/1‑148 (MQ=255) acacCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGCGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCt > 3:212579/1‑147 (MQ=255) ttGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGt > 6:49376/1‑148 (MQ=255) ggACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGtt > 4:164477/1‑147 (MQ=255) gACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCa < 5:49376/148‑1 (MQ=255) acacAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAgc > 8:276658/1‑149 (MQ=255) caGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCTCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCa < 6:61048/149‑1 (MQ=255) aGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCAc > 7:50077/1‑149 (MQ=255) gCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACt > 3:101315/1‑148 (MQ=255) tagGAGCGGGTTTACCCGCGAAAGGGCCAGTACAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAgcg > 5:24097/1‑149 (MQ=255) ggAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTc > 4:127416/1‑81 (MQ=255) ggAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTc < 3:127416/81‑1 (MQ=255) gCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTg < 3:164477/149‑1 (MQ=255) gggTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCGGCGCACTGAACAGCGCCTTg > 2:244857/1‑147 (MQ=255) gggTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTg > 7:35382/1‑147 (MQ=255) tACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTg < 3:48520/148‑1 (MQ=255) aCCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTgg < 8:35382/148‑1 (MQ=255) ccGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCg > 4:95506/1‑149 (MQ=255) aaGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGa > 2:6079/1‑149 (MQ=255) aaGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGa < 8:50077/149‑1 (MQ=255) ccAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTtc > 8:129222/1‑149 (MQ=255) ccAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTtc < 6:70488/149‑1 (MQ=255) gTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCa < 3:95506/149‑1 (MQ=255) tCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTgg < 1:141462/131‑1 (MQ=255) tCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTgg > 2:141462/1‑131 (MQ=255) tCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCAt < 1:6079/149‑1 (MQ=255) gCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATa > 7:224562/1‑149 (MQ=255) caacaaAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATAcc > 1:172040/1‑149 (MQ=255) caacaaAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATAcc > 2:175132/1‑149 (MQ=255) aacaaAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGAt > 3:111069/1‑145 (MQ=255) aacaaAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGAt < 4:111069/145‑1 (MQ=255) aacaaAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATAccc > 6:108985/1‑149 (MQ=255) caaAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGaa < 5:82624/116‑1 (MQ=255) caaAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGaa > 6:82624/1‑116 (MQ=255) aaaaaaGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATACCCACGc < 4:101315/149‑1 (MQ=255) aaGCCCGCATCGTTTGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATACCCACGCCATg > 6:101876/1‑149 (MQ=255) aGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATACCCACGCCATGt < 4:212579/149‑1 (MQ=255) cccGCATCAAACGATGCGGGCTGTATCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATACCCACGCCATGTAc > 7:220736/1‑149 (MQ=255) gCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATACCCACGCCATGTACCgg < 6:24097/149‑1 (MQ=255) cATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATACCCACGCCATGTACCtgg < 8:224562/149‑1 (MQ=255) tCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATACCCACGCCATGTACCGggcg > 3:121026/1‑149 (MQ=255) aaCGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATACCCACGCCATGTACCGGGcggcc > 2:233730/1‑149 (MQ=255) | GTTGTGCTGGCCCTTTCGCGGGTAGACCCGCTCCTACGCACCGATCTGCGGTGGGCACACACCGGGTGTTGGACACAGGCCGTAGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGTCCAGGCCAACAAAAAAAGCCCGCATCAAACGATGCGGGCTTTCTCATCCCTCATTTCAGGCTTCAGGCCGCCTTGGCTTCCTGCTGGCTCAGCGAGCGGTTCAGCGCACTGAACAGCGCCTTGAAGCTGGCCGTGGTGATGTTCTCATCGATACCCACGCCATGTACCGGGCGGCC > NC_002947/1168558‑1168849 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |