Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,243,059 | A→C | 6.8% | intergenic (‑175/‑50) | PP_1083 ← / → tsaA | (2Fe‑2S)‑binding protein/peroxiredoxin |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,243,059 | 0 | A | C | 6.8% | 183.1 / 3.8 | 59 | intergenic (‑175/‑50) | PP_1083/tsaA | (2Fe‑2S)‑binding protein/peroxiredoxin |
Reads supporting (aligned to +/- strand): ref base A (30/25); new base C (2/2); total (32/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 |
GGTTGGAGCTTAATGTTAATGAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGCCTCGGC > NC_002947/1242915‑1243203 | ggTTGGAGCTTAATGTTAATGAGAATGCTTGTCAAAGATCATTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGc < 5:305589/148‑1 (MQ=255) cTTAATGTTAATGAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGAGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGc > 3:158924/1‑149 (MQ=255) ttaatgttaatgAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGcc > 4:333225/1‑149 (MQ=255) aatgttaatgAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGcc < 8:246838/147‑1 (MQ=255) aatgttaatgAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCg > 3:104464/1‑149 (MQ=255) aatgAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAAc > 8:243174/1‑149 (MQ=255) gagaATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCCAGACGGGCTTGCCCGACatc < 8:129926/145‑3 (MQ=255) gagaATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCCAGACGGGCTTGCCCGACatc > 7:129926/1‑143 (MQ=255) agaATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGt < 3:333225/148‑1 (MQ=255) aaTGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGtttt > 5:40049/1‑149 (MQ=255) ttGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCAcc > 5:76491/1‑149 (MQ=255) gTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCAccc < 6:40049/148‑1 (MQ=255) tCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGccc > 4:146350/1‑119 (MQ=255) tCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGccc < 3:146350/119‑1 (MQ=255) tCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCt > 8:97341/1‑148 (MQ=255) aaaGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAg > 1:243210/1‑115 (MQ=255) aaaGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAg < 2:243210/114‑1 (MQ=255) aaGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCtcat > 3:220948/1‑148 (MQ=255) tCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGAt > 7:304719/1‑148 (MQ=255) aGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTa < 5:282368/146‑1 (MQ=255) gtgctgtgctTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGa < 4:104464/149‑1 (MQ=255) tgctgtgctTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCCAGACGGGCTTGCCCga > 2:74790/1‑110 (MQ=255) tgctgtgctTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCCAGACGGGCTTGCCCga < 1:74790/111‑2 (MQ=255) tgtgctTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCg > 3:214733/1‑148 (MQ=255) gCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTg < 4:158924/148‑1 (MQ=255) gCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTg < 8:304719/148‑1 (MQ=255) gtggtC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGaaa < 6:76491/149‑1 (MQ=255) cTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGga > 1:265357/1‑111 (MQ=255) cTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGga < 2:265357/111‑1 (MQ=255) gTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGt > 6:308872/1‑132 (MQ=255) gTCGACGGAGTCGGCCTGTCATGACAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGt < 5:308872/132‑1 (MQ=255) tCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGAttt > 2:244233/1‑148 (MQ=255) tCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGAttt > 2:272997/1‑148 (MQ=255) gACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAgg > 6:137179/1‑103 (MQ=255) gACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAgg < 5:137179/103‑1 (MQ=255) gACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCa < 7:97341/148‑1 (MQ=255) gACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCAc > 1:157977/1‑149 (MQ=255) gACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCAc > 3:140394/1‑149 (MQ=255) ggAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGt > 8:72863/1‑149 (MQ=255) aGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGAttt < 1:129982/141‑1 (MQ=255) aGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCACGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGAttt > 2:129982/1‑141 (MQ=255) tCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCg < 2:157977/149‑1 (MQ=255) cTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGt < 7:72863/149‑1 (MQ=255) cATGAGAAGCCGTGTTTGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGTTTACAATGAGCGTACTCGTTGGTAAGAAAGCCGCCTATTTCACCGTTCCGGCCGTGCt < 4:220948/148‑1 (MQ=255) aTGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGa < 7:202587/116‑1 (MQ=255) aTGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATAAGCAGATTACAATGAGCGTACTCTTTGGTAAGa > 8:202587/1‑116 (MQ=255) agaAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGGAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGc > 8:65360/1‑148 (MQ=255) ccGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTATGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGc < 1:244233/149‑1 (MQ=255) gtgtATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCga > 3:282434/1‑149 (MQ=255) tATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGc > 7:32351/1‑144 (MQ=255) tgatgGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGcc > 3:173341/1‑127 (MQ=255) tgatgGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGcc < 4:173341/127‑1 (MQ=255) gTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGa < 2:221824/148‑1 (MQ=255) ttgGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCt > 6:200922/1‑149 (MQ=255) gATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGc < 8:32351/149‑1 (MQ=255) cGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGAtcgtcg > 3:239436/1‑128 (MQ=255) cGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGCCTCgg > 6:313285/1‑149 (MQ=255) cGGGCAAGCACGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGAtcgtcg < 4:239436/128‑1 (MQ=255) ggCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGCCTCGGc > 6:216506/1‑148 (MQ=255) | GGTTGGAGCTTAATGTTAATGAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTC‑GCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGCCTCGGC > NC_002947/1242915‑1243203 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |