Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,243,062 | C→A | 7.4% | intergenic (‑178/‑47) | PP_1083 ← / → tsaA | (2Fe‑2S)‑binding protein/peroxiredoxin |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,243,062 | 0 | C | A | 7.4% | 162.2 / 3.1 | 54 | intergenic (‑178/‑47) | PP_1083/tsaA | (2Fe‑2S)‑binding protein/peroxiredoxin |
Reads supporting (aligned to +/- strand): ref base C (28/22); new base A (2/2); total (30/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.65e-01 |
GGTTGGAGCTTAATGTTAATGAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGCCTCGGCCATCAAG > NC_002947/1242915‑1243210 | ggTTGGAGCTTAATGTTAATGAGAATGCTTGTCAAAGATCATTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGc < 5:305589/148‑1 (MQ=255) cTTAATGTTAATGAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGAGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGc > 3:158924/1‑149 (MQ=255) ttaatgttaatgAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGcc > 4:333225/1‑149 (MQ=255) aatgttaatgAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGcc < 8:246838/147‑1 (MQ=255) aatgttaatgAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCg > 3:104464/1‑149 (MQ=255) aatgAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAAc > 8:243174/1‑149 (MQ=255) gagaATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCCAGACGGGCTTGCCCGACatc < 8:129926/145‑3 (MQ=255) gagaATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCCAGACGGGCTTGCCCGACatc > 7:129926/1‑143 (MQ=255) agaATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGt < 3:333225/148‑1 (MQ=255) aaTGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGtttt > 5:40049/1‑149 (MQ=255) ttGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCAcc > 5:76491/1‑149 (MQ=255) gTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCAccc < 6:40049/148‑1 (MQ=255) tCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGccc > 4:146350/1‑119 (MQ=255) tCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGccc < 3:146350/119‑1 (MQ=255) tCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCt > 8:97341/1‑148 (MQ=255) aaGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCtcat > 3:220948/1‑148 (MQ=255) tCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGAt > 7:304719/1‑148 (MQ=255) aGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTa < 5:282368/146‑1 (MQ=255) gtgctgtgctTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGa < 4:104464/149‑1 (MQ=255) tgctgtgctTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCCAGACGGGCTTGCCCga < 1:74790/111‑2 (MQ=255) tgctgtgctTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCCAGACGGGCTTGCCCga > 2:74790/1‑110 (MQ=255) tgtgctTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCg > 3:214733/1‑148 (MQ=255) gCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTg < 8:304719/148‑1 (MQ=255) gCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTg < 4:158924/148‑1 (MQ=255) gtggtCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGaaa < 6:76491/149‑1 (MQ=255) cTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGga < 2:265357/111‑1 (MQ=255) cTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGga > 1:265357/1‑111 (MQ=255) gTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGt > 6:308872/1‑132 (MQ=255) gTCGACGGAGTCGGCCTGTCATGACAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGt < 5:308872/132‑1 (MQ=255) tCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGAttt > 2:272997/1‑148 (MQ=255) tCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGAttt > 2:244233/1‑148 (MQ=255) gACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAgg < 5:137179/103‑1 (MQ=255) gACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAgg > 6:137179/1‑103 (MQ=255) gACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCa < 7:97341/148‑1 (MQ=255) gACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCAc > 1:157977/1‑149 (MQ=255) gACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCAc > 3:140394/1‑149 (MQ=255) ggAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGt > 8:72863/1‑149 (MQ=255) aGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGAttt < 1:129982/141‑1 (MQ=255) aGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCACGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGAttt > 2:129982/1‑141 (MQ=255) tCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCg < 2:157977/149‑1 (MQ=255) cTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGt < 7:72863/149‑1 (MQ=255) cATGAGAAGCCGTGTTTGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGTTTACAATGAGCGTACTCGTTGGTAAGAAAGCCGCCTATTTCACCGTTCCGGCCGTGCt < 4:220948/148‑1 (MQ=255) aTGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGa < 7:202587/116‑1 (MQ=255) aTGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATAAGCAGATTACAATGAGCGTACTCTTTGGTAAGa > 8:202587/1‑116 (MQ=255) agaAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGGAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGc > 8:65360/1‑148 (MQ=255) ccGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTATGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGc < 1:244233/149‑1 (MQ=255) gtgtATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCga > 3:282434/1‑149 (MQ=255) tATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGc > 7:32351/1‑144 (MQ=255) tgatgGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGcc > 3:173341/1‑127 (MQ=255) tgatgGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGcc < 4:173341/127‑1 (MQ=255) gTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGa < 2:221824/148‑1 (MQ=255) ttgGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCt > 6:200922/1‑149 (MQ=255) gATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGc < 8:32351/149‑1 (MQ=255) cGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGAtcgtcg > 3:239436/1‑128 (MQ=255) cGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGCCTCgg > 6:313285/1‑149 (MQ=255) cGGGCAAGCACGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGAtcgtcg < 4:239436/128‑1 (MQ=255) ggCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGCCTCGGc > 6:216506/1‑148 (MQ=255) cccGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGCCTCGGCCATCAAg < 4:214733/149‑1 (MQ=255) | GGTTGGAGCTTAATGTTAATGAGAATGCTTGTCAAAGATCTTTCTGAGGGTGCTGTGCTTGAGCGACCGGTGGTCGCTTTGTCGACGGAGTCGGCCTGTCATGAGAAGCCGTGTATGATGGTCGGCCTTTGTTGGATGTCGGGCAAGCCCGTCTGGCCCGGCAAACGGTTTTTCACCCTCATCAGGAGATTACAATGAGCGTACTCGTTGGTAAGAAAGCCCCCGATTTCACCGTTCCGGCCGTGCTGGGCAATGGCGAGATCGTCGATAGCTTCAACCTGGCCTCGGCCATCAAG > NC_002947/1242915‑1243210 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |