| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,364,766 | A→T | 8.8% | intergenic (+136/+13) | dctA‑I → / ← PP_1189 | C4‑dicarboxylate transport protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,364,766 | 0 | A | T | 8.8% | 158.1 / 4.9 | 57 | intergenic (+136/+13) | dctA‑I/PP_1189 | C4‑dicarboxylate transport protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (28/24); new base T (3/2); total (31/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01 | |||||||||||
CCGGCTCGTTGAGAGCTGGTTGAAATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTGCGC > NC_002947/1364619‑1364913 | ccGGCTCGTTGAGAGCTGGTTGAAATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGaa < 8:302638/149‑1 (MQ=255) ttGAGAGCTGGTTGAAATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTgg < 1:192437/149‑1 (MQ=255) agagCTGGTTGAAATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGc < 3:161515/140‑1 (MQ=255) agagCTGGTTGAAATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGc > 4:161515/1‑140 (MQ=255) aaTGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTAc < 3:284211/149‑1 (MQ=255) aaTGAGAAAGGAGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTa > 1:210664/1‑148 (MQ=255) aTGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTAc > 5:183565/1‑148 (MQ=255) aTGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTAc > 6:174153/1‑148 (MQ=255) tGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCa > 8:306101/1‑149 (MQ=255) aaaGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTc < 5:174153/149‑1 (MQ=255) aGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCt < 4:119415/130‑1 (MQ=255) aGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCt > 3:119415/1‑130 (MQ=255) gCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGt < 3:321451/137‑1 (MQ=255) gCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGt > 4:321451/1‑137 (MQ=255) gACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAa‑cac < 5:85920/149‑1 (MQ=255) gACCAAAGGTCGCCTTTTTCGTGTTAGAGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAa‑cac > 4:192110/1‑149 (MQ=255) ccAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGATCACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CAccc < 7:306101/149‑1 (MQ=255) cAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCg > 4:310131/1‑149 (MQ=255) cAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCg > 3:307454/1‑149 (MQ=255) aaGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCa < 3:43948/128‑1 (MQ=255) aaGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCa > 4:43948/1‑128 (MQ=255) ggTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATg < 2:210664/149‑1 (MQ=255) gTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGa > 8:208652/1‑149 (MQ=255) cTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTcc < 6:183565/149‑1 (MQ=255) tttttCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGa < 6:167089/140‑1 (MQ=255) tttttCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGa > 5:167089/1‑140 (MQ=255) tttCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCgg < 7:208652/148‑1 (MQ=255) gtTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCggg > 4:342657/1‑149 (MQ=255) ttAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCggg < 5:261303/148‑1 (MQ=255) gcgcGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAAt > 4:66558/1‑149 (MQ=255) cgGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGc > 2:217892/1‑148 (MQ=255) ttGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTAc > 3:214827/1‑149 (MQ=255) ccTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATc < 4:307454/149‑1 (MQ=255) cTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACtt > 7:26716/1‑96 (MQ=255) cTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACtt < 8:26716/96‑1 (MQ=255) tCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGAt < 3:126970/104‑1 (MQ=255) tCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGAt > 4:126970/1‑104 (MQ=255) aaTTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGaa < 1:217892/147‑1 (MQ=255) tttCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTc < 2:231061/72‑1 (MQ=255) tttCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTc > 1:231061/1‑72 (MQ=255) tttCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACtt > 1:12292/1‑148 (MQ=255) cTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCt > 8:240057/1‑124 (MQ=255) cTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCt < 7:240057/124‑1 (MQ=255) aaaGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGCTAATGCCACCTTACTTGCACATCCCAGACCTTCACCCCg > 1:191136/1‑149 (MQ=255) aGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTa < 3:192110/149‑1 (MQ=255) gAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATc > 8:97780/1‑149 (MQ=255) gAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATc < 3:342657/149‑1 (MQ=255) ggCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTgg > 2:91177/1‑147 (MQ=255) tgagggccacGGGCTTCGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAggccggc > 5:280143/8‑149 (MQ=255) gccacGGGCTTCGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTgg < 6:280143/147‑1 (MQ=255) gccacGGGCTTCGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATCCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTgg < 5:60504/147‑1 (MQ=255) gccacGGGCTTAGCCCGTGGGCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTTATTCCCCCGTACTTGGACAACCCAGAACTTAACCCCCTTCCCCCGCGCGGGCGGTGGGTTGTGGTAGGCCGGCCGTgg > 6:60504/3‑149 (MQ=255) aaCACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTgg > 1:133768/1‑149 (MQ=255) ccacGGGCTTCGCCCGTGGCCCTCAGCCCAGTACCACTTCCAAGCACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTgg > 1:68156/2‑149 (MQ=255) acacGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTggg < 3:66558/149‑1 (MQ=255) gggCGAAGCCTGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGt < 2:203439/146‑1 (MQ=255) gggCGAAGCCTGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGt > 1:203439/1‑146 (MQ=255) gggCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGACACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCt > 7:12220/1‑149 (MQ=255) aaGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTgcgc > 3:137925/1‑148 (MQ=255) | CCGGCTCGTTGAGAGCTGGTTGAAATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAA‑CACCCGGATGACGTCCGGCTGCGGGTAATGCCACCTTACTTGCACATCCCAGAACTTCACCCCGTACACCCGCTCGGACGGTGGTATCTGGTAGGCCGGCCGTGGGTCCTGCGC > NC_002947/1364619‑1364913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |