Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,557,011 | A→T | 8.2% | intergenic (+63/‑30) | purU‑II → / → PP_5468 | formyltetrahydrofolate hydrolase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,557,011 | 0 | A | T | 8.2% | 130.8 / 3.3 | 49 | intergenic (+63/‑30) | purU‑II/PP_5468 | formyltetrahydrofolate hydrolase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (23/22); new base T (2/2); total (25/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01 |
TGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAAGCCCTGGATGACACGGATGGCACCGACTTC > NC_002947/1556875‑1557151 | tGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCaa > 2:93017/1‑149 (MQ=255) ccGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCTCTGCGcccctgtc < 8:178922/144‑5 (MQ=255) ccGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCTCTGCGcccctgtc > 7:178922/1‑140 (MQ=255) cTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGa > 5:345075/1‑148 (MQ=255) cTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCACTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGa > 6:295020/1‑148 (MQ=255) tCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAAt > 3:269349/1‑149 (MQ=255) gaggaCCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAg > 1:195853/1‑149 (MQ=255) gaCCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAgcaa > 6:357554/1‑149 (MQ=255) ccGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAgc < 8:145698/145‑1 (MQ=255) ccGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAgc > 7:145698/1‑145 (MQ=255) cTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGcaacaa < 7:178296/148‑1 (MQ=255) gTGCATGGTAACAAGCCTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAAcc < 8:303011/147‑1 (MQ=255) aTGGTAACAAGACTGTGGTGGTCGACTGACGCCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGGGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCGCGGCAAGCCGGGGGGGCGCGGCAGGGGGCAAGCACCGCGTCAGCCCCGTCg > 2:273963/1‑149 (MQ=255) tGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGc < 5:357554/149‑1 (MQ=255) cAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTggg < 6:30353/104‑1 (MQ=255) cAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTggg > 5:30353/1‑104 (MQ=255) aaGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCt > 4:249279/1‑149 (MQ=255) aGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTc < 6:345075/149‑1 (MQ=255) aGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTc < 5:295020/149‑1 (MQ=255) gtgtTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATc > 5:68944/1‑149 (MQ=255) ttCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCtt < 1:93017/149‑1 (MQ=255) tGACACCGTCTGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCg > 8:216788/1‑147 (MQ=255) tGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCg > 7:49479/1‑147 (MQ=255) acCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTg > 2:155094/1‑140 (MQ=255) acCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTg < 1:155094/140‑1 (MQ=255) acCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCt < 3:249279/149‑1 (MQ=255) gCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGcc < 2:195853/149‑1 (MQ=255) tgtgAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGc < 5:63185/142‑1 (MQ=255) tgtgAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGc > 6:63185/1‑142 (MQ=255) gtgAGATTCGGTGCTGCTGCGCAGCCCTGTCACGACTGGGTCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCGGTCTCCTCACCTCCACCGATCCTTGGCGATGGCTGCCTGGCCCGc < 5:192730/145‑1 (MQ=255) gtgAGATTCCGCGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCAACACCTCCACCGATCATTGGCGAAGGCTGCATGTCCCGCTag > 6:192730/1‑147 (MQ=255) tgAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTAc < 6:68944/147‑1 (MQ=255) gggCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCt < 2:215308/124‑1 (MQ=255) gggCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCt > 1:215308/1‑124 (MQ=255) tgctgcGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCt < 8:79787/140‑1 (MQ=255) tgctgcGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCt > 7:79787/1‑140 (MQ=255) tgctgcGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAAGCCCTg > 8:326529/1‑149 (MQ=255) tgcGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATc > 6:41034/1‑104 (MQ=255) tgcGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATc < 5:41034/104‑1 (MQ=255) cAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGTCTGCCTGGCCCGCTACGACCCTGAAGCCCTGGATGaca < 7:216788/149‑1 (MQ=255) tGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTAc < 2:148172/121‑1 (MQ=255) tGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTAc > 1:148172/1‑121 (MQ=255) tCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAAGCCCTGGATGACACGGATGGc < 8:49479/149‑1 (MQ=255) gACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGa > 6:11801/1‑117 (MQ=255) gACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGa < 5:11801/117‑1 (MQ=255) cAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAAGCCCTGGATGACACGGATGGCACCGAc < 7:326529/149‑1 (MQ=255) cggggCGCTCTGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAAGCCCTGGATGACACGGATGGCACCGAc < 7:330232/147‑1 (MQ=255) cggggCGCTCTGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAAGCCCTGGATGACACGGATGGCACCGAc > 8:330232/2‑148 (MQ=255) gggCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAAGCCCTGGATGACACGGATGGCACCGACTTc > 5:343902/1‑149 (MQ=255) | TGGCCCGTGGCCTGCGTTATCACCTGGAGGACCGCGTGCTGGTGCATGGTAACAAGACTGTGGTGTTCGACTGACACCGTCCGGCTTGCTGTGAGATTCCGGGCTGCTGCGCAGCCCTGTCACGACAGGGGCGCAGAGCGCCCCGGCAATCCTGGGTGAAACGGCAATGACCAAGCAACGCAACAACCCCGTCGCCTCACCTCCACCGATCCTTGGCGAAGGCTGCCTGGCCCGCTACGACCCTGAAGCCCTGGATGACACGGATGGCACCGACTTC > NC_002947/1556875‑1557151 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |