| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,595,677 | C→T | 9.6% | *445* (TGA→TAA) | dctD‑III ← | C4‑dicarboxylate transport transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,595,677 | 0 | C | T | 9.6% | 147.0 / 4.2 | 52 | *445* (TGA→TAA) | dctD‑III | C4‑dicarboxylate transport transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (22/25); new base T (3/2); total (25/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.18e-01 | |||||||||||
CGGCATAGCGGTGGGTGTTGCGCCGCCCTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTC > NC_002947/1595543‑1595822 | cGGCATAGCGGTGGGTGTTGCGCCGCCCTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATa < 2:256931/149‑1 (MQ=255) cATAGCGGTGGGTGTTGCGCCGCCCTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATaaaa < 7:313493/149‑1 (MQ=255) cATAGCGGGGTTTGTTGCGACGCACTTTTCATTATCTGTCCTGACCGCTAAGGGCTTCAAAGCAGTCCAAAACCTTGAGCTTATTAGATGTTTTTAGCCTATCAGTTTCAGTTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATaaaa < 8:293897/149‑1 (MQ=255) gtgggtgTTGCGCCGCCCTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTcgc < 8:201243/149‑1 (MQ=255) gtgggtgTTGCGCCGCCCTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTcgc > 7:182459/1‑149 (MQ=255) gtTGCGCCGCCCTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCAtg‑cctgc > 6:231250/1‑127 (MQ=255) gtTGCGCCGCCCTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCAtg‑cctgc < 5:231250/127‑1 (MQ=255) cgccCTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATg < 8:182459/149‑1 (MQ=255) cgccCTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATg < 6:79372/149‑1 (MQ=255) cTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGc < 1:156535/140‑1 (MQ=255) cTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGc > 2:156535/1‑140 (MQ=255) tttGCAGGAGCGGTCCTGACCTCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGtt < 5:229806/149‑1 (MQ=255) aGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCAtc > 5:340176/1‑149 (MQ=255) aGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCAt < 6:25413/148‑1 (MQ=255) aGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCAt > 5:25413/1‑148 (MQ=255) ggTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGccc > 2:161392/1‑130 (MQ=255) ggTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGccc < 1:161392/130‑1 (MQ=255) tCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGt > 7:246247/1‑148 (MQ=255) tCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGG‑CATGAGCGGAAATCCGCTTATgacctgc < 1:263365/102‑1 (MQ=37) tCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGG‑CATGAGCGGAAATCCGCTTATgacctgc > 2:263365/1‑102 (MQ=37) cTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTaa < 8:246247/149‑1 (MQ=255) cTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGtt > 5:134980/1‑120 (MQ=255) cTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGtt < 6:134980/120‑1 (MQ=255) tGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGccc < 8:144203/87‑1 (MQ=255) gCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTc < 8:189040/98‑1 (MQ=255) gCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTc > 7:189040/1‑98 (MQ=255) gCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAgg > 2:226647/1‑146 (MQ=255) gCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCa < 1:226647/148‑1 (MQ=255) cAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAg < 4:144289/148‑1 (MQ=255) aaaGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGa > 1:349344/1‑142 (MQ=255) aaaGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGa < 2:349344/142‑1 (MQ=255) aGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGc > 3:95027/1‑146 (MQ=255) aGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGc < 4:95027/146‑1 (MQ=255) cAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCt > 6:11404/1‑149 (MQ=255) aaaaCCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGc < 7:20122/123‑1 (MQ=255) aaaaCCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGc > 8:20122/1‑123 (MQ=255) aaaCCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTcc < 6:340176/149‑1 (MQ=255) gCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGAc < 5:11404/149‑1 (MQ=255) gCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGAtctc > 1:126388/1‑149 (MQ=255) gCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGAtctc < 2:126388/149‑1 (MQ=255) cGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCGGTTGCAAGGCCTCCATCACCGACTTGATCTCg > 2:63240/1‑149 (MQ=255) cGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCg > 2:196724/1‑149 (MQ=255) aTCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGAc > 2:159932/1‑149 (MQ=255) aGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGc > 5:192160/1‑148 (MQ=255) tGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGAGTTGATCTCGCCCCCATGCTGACGCAAgg < 1:196724/149‑1 (MQ=255) caggcATGAGCGGAAATCCGCTTATGACCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTGGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGc < 1:266941/125‑1 (MQ=38) caggcATGAGCGGAAATCCGCTTATGACCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGc > 2:266941/5‑129 (MQ=38) caggcATGAGCGGAAATCCGCTTATGACCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGcc > 8:255186/5‑149 (MQ=255) cGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCa > 4:90781/1‑149 (MQ=255) ccGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTgcgc < 3:90781/148‑1 (MQ=255) ccGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGcc > 5:291504/1‑149 (MQ=255) gCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTc > 5:151474/1‑149 (MQ=255) | CGGCATAGCGGTGGGTGTTGCGCCGCCCTTTGCAGGAGCGGTCCTGACCGCGAAGGGCTGCAAAGCAGTCCAAAACCTTGAGCTTATGAGCGGTTTTTTGCCTATCAGGTGCAGGTCATAAGCGGATTTCCGCTCATG‑CCTGCCCAATAAAATCCTCGCGCACCAGCCCATGCCGTTGCATCTTCTCGTTAAGCGTGCGCCGAGGCAGTTGCAAGGCCTCCATCACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTC > NC_002947/1595543‑1595822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |