Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,595,911 | G→A | 6.9% | A367V (GCG→GTG) | dctD‑III ← | C4‑dicarboxylate transport transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,595,911 | 0 | G | A | 6.9% | 172.0 / 2.3 | 59 | A367V (GCG→GTG) | dctD‑III | C4‑dicarboxylate transport transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (25/29); new base A (2/2); total (28/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 |
ACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCC > NC_002947/1595767‑1596058 | aCCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCAtt > 8:206424/1‑149 (MQ=255) ccGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTg > 6:234798/1‑149 (MQ=255) gACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGc < 6:151474/149‑1 (MQ=255) gATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGtt > 4:298424/1‑149 (MQ=255) gATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGtt > 7:35506/1‑149 (MQ=255) aTCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGtt < 7:206424/148‑1 (MQ=255) tcGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCACGAATGCTTCCATCTGCTCGCCCAGCGTCTGCCCGGCACGTGCCCCCTCGATATTAGGCGAACACCCCCCCAACGCATGCCGCACCGCCCCAATGGCCAGTTcacg > 5:168726/1‑149 (MQ=255) aTGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTgc < 1:307390/149‑1 (MQ=255) aTGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTgc > 7:24764/1‑149 (MQ=255) cTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTgccag < 8:177456/149‑1 (MQ=255) cAAGGCCGCCCGCAGGCATTGCGCCTCGAATGCTTCCTTCTGCTCGCCCAGCGACTGCCCGGCTGGTGCCACCTCGATTTTTGGCGAACCCAGCCCCTACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCTGGCGAGt < 6:168726/149‑1 (MQ=255) aaGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTc < 8:24764/149‑1 (MQ=255) ggCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCAt < 3:298424/149‑1 (MQ=255) gcaGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCa > 3:273926/1‑140 (MQ=255) gcaGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCa < 4:273926/140‑1 (MQ=255) cATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTg > 8:10057/1‑149 (MQ=255) cATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTg > 8:229920/1‑149 (MQ=255) gcCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTc < 3:21571/107‑1 (MQ=255) gcCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTc > 4:21571/1‑107 (MQ=255) aTGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCAtgt < 2:123729/125‑1 (MQ=255) ttCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCAccc > 4:252940/1‑148 (MQ=255) cATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTcacg > 7:133176/1‑96 (MQ=255) cATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTcacg < 8:133176/96‑1 (MQ=255) cATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATa < 3:252940/149‑1 (MQ=255) tCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAgc > 3:123423/1‑149 (MQ=255) cTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCCCGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAgcggcg > 6:194876/1‑149 (MQ=255) cTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGtt < 1:22679/96‑1 (MQ=255) cTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGtt > 2:22679/1‑96 (MQ=255) cTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAgcggcg > 5:346217/1‑149 (MQ=255) tCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGAc > 8:179241/1‑114 (MQ=255) tCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGAc < 7:179241/114‑1 (MQ=255) gCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGcggcgg < 8:35506/147‑1 (MQ=255) gCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGcggcgg < 5:8410/147‑1 (MQ=255) ccAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGAcagc > 1:309448/1‑113 (MQ=255) ccAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGAcagc < 2:309448/113‑1 (MQ=255) ccAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGcc > 3:292717/1‑149 (MQ=255) ccAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCAAGTCATGTGACAGCAGATGCGCCAGATGTGCACCCCAAAGCGGCGGGGcc > 2:206828/1‑149 (MQ=255) cAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCtgt < 8:230325/127‑1 (MQ=255) cAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCtgt > 7:230325/1‑127 (MQ=255) cAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCggg < 8:295548/145‑1 (MQ=255) cAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCggg > 7:295548/1‑145 (MQ=255) cGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGc < 4:123423/149‑1 (MQ=255) ggCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCt < 5:194876/149‑1 (MQ=255) gCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCtt < 7:229920/149‑1 (MQ=255) gCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCtt < 7:10057/149‑1 (MQ=255) gATATTTGGCGAACCCAGTCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCAc > 6:241734/1‑149 (MQ=255) tttGGCGAACCCAGTCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGc < 5:241734/149‑1 (MQ=255) gCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCATGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGTGACCAAGCTTTTCACCGGCAGCACGGGCaaa < 1:206828/148‑1 (MQ=255) gCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAg > 1:326154/1‑149 (MQ=255) cAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGa < 6:346217/149‑1 (MQ=255) ccAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAAcag > 4:46622/1‑148 (MQ=255) aCGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACagcagc < 2:326154/149‑1 (MQ=255) aTGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGa < 1:281243/100‑1 (MQ=255) aTGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGa > 2:281243/1‑100 (MQ=255) tGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAAt < 4:292717/149‑1 (MQ=255) ccGCTCCGCCACATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTc > 4:80696/1‑132 (MQ=255) ccGCTCCGCCACATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTc < 3:80696/132‑1 (MQ=255) ccGCTCCGCCACATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTc < 3:85536/132‑1 (MQ=255) ccGCTCCGCCACATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTc > 4:85536/1‑132 (MQ=255) cgcATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCccgcc < 3:46622/149‑1 (MQ=255) | ACCGACTTGATCTCGCCCCCATGCTGACGCAAGGCCGCACGCAGGCATTGCGCCTCGAATGCTTCCATCTGCTCGCCCAGCGACTGCCCGGCAGGTGCCACCTCGATATTTGGCGAACCCAGCCCCAACGCATGCCGCTCCGCCGCATTGGCCAGTTCACGCACGTTGCCAGGCCAGTCATGTGACAGCAGCTGCGCCAGCTGTGCACCCGATAGCGGCGGGGCCGCGCGACCAAGCTTTTCACCGGCAGCACGGGCAAAGTGTTCGAACAGCAGCGGAATGTCCTCCCGCC > NC_002947/1595767‑1596058 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |