| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,724 | A→G | 10.9% | V410V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,724 | 0 | A | G | 10.9% | 302.6 / 21.1 | 110 | V410V (GTA→GTG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (51/47); new base G (7/5); total (58/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Only 100 of 110 total aligned reads displayed.
TGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTT > NC_002947/195579‑195870 | tGACCCCGAATACGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGGGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTGAcc > 4:96620/1‑149 (MQ=11) cccgcaaTCCCACCCCGCCTCAGACCACGTTCAACGACTGGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTGACCGTg < 6:46439/144‑1 (MQ=11) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTGAcc < 8:33091/145‑1 (MQ=2) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTGAcc > 7:33091/1‑145 (MQ=2) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTg > 8:133007/1‑148 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTGACCGTGac > 6:318217/1‑148 (MQ=9) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTGACCGTGacc > 4:2899/1‑147 (MQ=2) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCg > 5:65687/1‑144 (MQ=40) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCg < 6:65687/144‑1 (MQ=40) tCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt > 1:341463/1‑149 (MQ=255) ccccGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc > 5:276501/1‑149 (MQ=40) ccGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGACGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg < 1:242383/149‑1 (MQ=255) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc < 4:247206/149‑1 (MQ=39) aGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc > 5:335035/1‑148 (MQ=39) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt > 6:12910/1‑149 (MQ=255) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt > 2:160058/1‑149 (MQ=255) ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAtt < 7:7380/149‑1 (MQ=255) ccACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt > 4:266047/1‑148 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc > 2:109861/1‑136 (MQ=37) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc < 1:109861/136‑1 (MQ=37) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 2:306652/1‑149 (MQ=255) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 7:302606/1‑149 (MQ=255) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTTCACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 1:111280/1‑149 (MQ=255) gATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGCACCTGTCCAACGGCCAAACGATTACCg > 6:328178/1‑149 (MQ=255) gATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACGTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 1:94459/1‑149 (MQ=37) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCTAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt < 8:302606/149‑1 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGaa < 2:111280/149‑1 (MQ=255) aCGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTg > 8:290039/1‑147 (MQ=39) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 5:12910/149‑1 (MQ=255) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 1:160058/149‑1 (MQ=255) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 1:119182/1‑148 (MQ=255) gACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa < 6:276501/148‑1 (MQ=39) accactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACTCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAACGTTGAAGCGGGTAAAAca > 4:217583/1‑146 (MQ=255) accactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa < 2:341463/149‑1 (MQ=255) ccactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACGTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 5:129108/149‑1 (MQ=255) ccaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGtt > 2:82428/1‑131 (MQ=21) caccaccGCGACCCTGACGGCGAGTCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg < 5:346698/138‑1 (MQ=255) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg > 6:323080/1‑137 (MQ=40) caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 5:323080/137‑1 (MQ=40) actaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg < 2:119182/146‑1 (MQ=255) taccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa > 6:306076/2‑119 (MQ=255) taccGCGACCCAGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa < 5:306076/118‑1 (MQ=255) accGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGtt > 7:151519/1‑126 (MQ=17) accGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg > 7:143687/1‑146 (MQ=39) accGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCa < 8:143687/148‑1 (MQ=39) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGAt > 8:211317/1‑149 (MQ=39) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTc > 6:296842/1‑149 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGt < 3:139877/113‑1 (MQ=12) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGt > 4:139877/1‑113 (MQ=12) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTcc < 5:296842/148‑1 (MQ=39) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACAGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTcc < 3:217583/148‑1 (MQ=255) aCGGCGAGCCCGGCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTcc < 6:55693/148‑1 (MQ=255) gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCa > 3:152649/1‑144 (MQ=39) gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCa < 4:152649/144‑1 (MQ=39) gCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 1:306652/149‑1 (MQ=39) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCg < 3:28261/128‑1 (MQ=40) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCg > 4:28261/1‑128 (MQ=40) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 6:335035/148‑1 (MQ=39) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 7:133007/148‑1 (MQ=39) tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 7:290039/149‑1 (MQ=39) aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGt < 3:266047/149‑1 (MQ=39) aGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTac > 2:180724/1‑148 (MQ=39) gcgTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACaacaa‑c > 1:44328/1‑149 (MQ=39) tGAGCACTTACACCGTGACCCTGA‑GCAACCGTGCCCAGACGCCGGAAACCGTGAACATGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGTCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGc < 5:328178/149‑1 (MQ=14) aTCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCt < 8:228958/148‑1 (MQ=40) tCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTc < 4:122549/107‑1 (MQ=255) tCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTc > 3:122549/1‑107 (MQ=255) cTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAcaacaa < 3:134909/139‑1 (MQ=39) cTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAcaacaa > 4:134909/1‑139 (MQ=39) ttACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCt < 5:70160/131‑1 (MQ=38) ttACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCt > 6:70160/1‑131 (MQ=38) tctcacCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGAcc < 5:298727/145‑1 (MQ=255) acCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCg < 2:347723/141‑1 (MQ=39) acCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCg > 1:347723/1‑141 (MQ=39) acCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCAAGACCCCGGCCAATGACGTATACAACAA‑CCGCTCGACCGACat > 6:298727/1‑148 (MQ=255) cGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 8:44818/112‑1 (MQ=39) gACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACTGTGAACCTGTCCAACGGCCAAACGATTACCGTTGaa < 7:8122/70‑1 (MQ=25) cgtGA‑GCAACCCTGCCAAGACGGCGTTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTTAAGCGTGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGa < 8:184454/132‑1 (MQ=14) ccTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa > 4:51763/1‑81 (MQ=255) ccTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa < 3:51763/81‑1 (MQ=255) ccTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGa > 7:184454/1‑134 (MQ=40) cTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCAt > 7:302186/1‑149 (MQ=39) tGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATc > 7:68441/1‑149 (MQ=39) a‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATc > 6:67880/1‑147 (MQ=39) gCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACCGGCTCGACCGTCAGCGTCACCATCga < 1:180724/149‑1 (MQ=255) gCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATCgag > 8:4223/1‑149 (MQ=39) cAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATCgaga < 3:229966/149‑1 (MQ=39) cAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATCgaga < 2:94459/149‑1 (MQ=39) aaCCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATCGagag > 4:20697/1‑149 (MQ=39) cccTGCCCAGACGCCGGTACCCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCa < 6:263928/137‑1 (MQ=38) cccTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACATCAA‑CGGCTCGACCGTCa > 4:253382/1‑131 (MQ=38) cccTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACATCAA‑CGGCTCGACCGTCa < 3:253382/131‑1 (MQ=38) cccTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGt < 4:279937/129‑1 (MQ=39) cccTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGt > 3:279937/1‑129 (MQ=39) cccAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCAc < 3:20697/148‑1 (MQ=37) cGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTggcggc < 8:302186/149‑1 (MQ=39) ccGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCaa > 7:35125/1‑149 (MQ=39) cGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGAcc > 8:188237/1‑113 (MQ=39) gTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACtt > 2:152452/1‑149 (MQ=39) gTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTAAAACAA‑CGGCTCGACCGTCAGCGTCACCATCCAGAGCGCCACTGGCGGCAACtt > 7:192281/1‑149 (MQ=255) | TGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGA‑GCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAA‑CGGCTCGACCGTCAGCGTCACCATCGAGAGCGCCACTGGCGGCAACTT > NC_002947/195579‑195870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |