| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,642,278 | C→G | 12.0% | intergenic (‑106/+46) | PP_1442 ← / ← lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,642,278 | 0 | C | G | 12.0% | 246.0 / 19.7 | 83 | intergenic (‑106/+46) | PP_1442/lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| Reads supporting (aligned to +/- strand): ref base C (37/36); new base G (5/5); total (42/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.43e-01 | |||||||||||
GCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGG > NC_002947/1642140‑1642425 | gCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCCTTCGCGGGCAAGCCCGCACCTGCACGGGTACGCTACCCCTGc < 5:220988/149‑1 (MQ=37) cTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGCACCGCCCTCTTCGCGGGCAAGCCCGCACCTGCACGGGTACGCTACCCCTGCa < 6:162593/149‑1 (MQ=21) cTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGCACCGCCCTCTTCGCGGGCAAGCCCGCACCTGCACGGGTACGCTACCCCTGCa < 6:167727/149‑1 (MQ=21) tCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAg > 2:75230/1‑149 (MQ=255) cAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAgg > 1:63470/1‑149 (MQ=255) gggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGTGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGc > 8:294077/1‑149 (MQ=255) gggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGc > 4:180860/1‑149 (MQ=255) ggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCg < 2:63470/149‑1 (MQ=255) gAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCgg > 8:186084/1‑149 (MQ=255) aaCGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGCTGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCggg < 7:186084/149‑1 (MQ=255) aCGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGc < 2:336044/149‑1 (MQ=255) gCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCACGGGTACGCTACCCCTGCAGgcgc > 8:135036/1‑141 (MQ=38) gCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCACGGGTACGCTACCCCTGCAGgcgc < 7:135036/141‑1 (MQ=38) gaggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCtt > 4:196308/1‑141 (MQ=255) gaggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCtt < 3:196308/141‑1 (MQ=255) ggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑cgcg > 8:312158/1‑146 (MQ=255) ggCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGc < 3:180860/149‑1 (MQ=255) gCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGt > 7:257244/1‑116 (MQ=255) gCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGt < 8:257244/116‑1 (MQ=255) gCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGc > 2:281027/1‑148 (MQ=255) cTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTa < 1:75230/149‑1 (MQ=255) cGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGaa > 7:293425/1‑149 (MQ=255) cGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACACGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGa > 2:213628/1‑148 (MQ=255) ggCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGTGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCg < 1:278079/132‑1 (MQ=255) ggCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCg > 2:278079/1‑132 (MQ=255) cGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTc < 1:281027/149‑1 (MQ=255) cGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTc > 3:72194/1‑149 (MQ=255) aGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCg < 8:293425/148‑1 (MQ=255) aGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCg < 6:159390/148‑1 (MQ=255) aCCCGGTGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCa > 7:320424/1‑116 (MQ=255) aCCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGt > 4:267752/1‑113 (MQ=255) aCCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGt < 3:267752/113‑1 (MQ=255) aCCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCa < 8:320424/116‑1 (MQ=255) ccGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACa < 3:51625/124‑1 (MQ=255) ccGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACa > 4:51625/1‑124 (MQ=255) gatgatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAg > 5:190103/1‑118 (MQ=255) gatgatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAg < 6:190103/118‑1 (MQ=255) atCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑tt > 6:332707/1‑146 (MQ=255) atCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑tt < 5:332707/146‑1 (MQ=255) tCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGc > 8:35434/1‑148 (MQ=255) tCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGc > 8:40847/1‑148 (MQ=255) gAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGa > 3:116390/1‑148 (MQ=255) aGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGc < 5:332673/107‑1 (MQ=255) aGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGc > 6:332673/1‑107 (MQ=255) aaaTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGc < 7:40847/149‑1 (MQ=255) aaaTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGc < 7:35434/149‑1 (MQ=255) aaaTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGc < 7:312158/149‑1 (MQ=255) tgctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCa < 7:294077/149‑1 (MQ=255) ctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAgg < 4:193160/149‑1 (MQ=255) gcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGcc > 3:293886/1‑149 (MQ=255) ccTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGc < 2:87967/147‑1 (MQ=255) tgCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTcg < 1:87933/148‑1 (MQ=255) cGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAg < 7:177410/138‑1 (MQ=255) cGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAg > 8:177410/1‑138 (MQ=255) cGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCa < 4:116390/149‑1 (MQ=255) gccctcttCGCGGGCAAGCCCGCACCTGCACGGGTACGCTACCCCTGCAGGCGCGGGCTTACT‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAg > 4:336673/7‑149 (MQ=18) tCCTTTCGCGAGTAAGCCCGGTCATGCAGGGGTAGCGTACCCGTGCAGGTTCGGGCTTGCC‑CGCGAAGATGGAGGTGCAGTCTATAAAATCACTTTCGCCACGTCGGCAAAGCGCTTTGGCGAAATGCACTGTCAGGCCTTCGCGCAgg < 1:213628/149‑1 (MQ=255) tttCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCa > 4:175859/1‑125 (MQ=255) tttCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCa < 3:175859/125‑1 (MQ=255) ttCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAg > 4:250451/1‑147 (MQ=255) ttCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAg < 3:250451/147‑1 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAg < 1:90213/138‑1 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAg > 2:90213/1‑138 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACCTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCgg > 5:248140/1‑147 (MQ=255) gCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACCTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttctt < 6:248140/149‑1 (MQ=255) cccGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttcttc > 6:2383/1‑149 (MQ=255) ccGCACCTGCACGGGTACGCTACCCCTGCAGGCGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttcttc > 4:203680/1‑148 (MQ=38) ccGCACCTGCACGGGTACGCTACCCCTGCAGGCGCGGGCTTACT‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttcttc > 5:204338/1‑148 (MQ=37) ccGCACCTGCACGGGTACGCTACCCCTACAGGCGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTa < 4:147642/133‑1 (MQ=37) ccGCACCTGCACGGGTACGCTACCCCTACAGGCGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTa > 3:147642/1‑133 (MQ=37) cgcgCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCg > 4:176527/1‑148 (MQ=255) cgcgCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCg > 4:232380/1‑148 (MQ=255) ccTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGc < 3:121724/135‑1 (MQ=255) ccTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGc > 4:121724/1‑135 (MQ=255) gCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttcttc < 1:21858/140‑1 (MQ=255) gCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttcttc > 2:21858/1‑140 (MQ=255) ggggTAGCGTACCCGTGCAGGTGCGGGCTTGCCTCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAgg > 1:222506/1‑121 (MQ=255) ggggTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAgg < 2:222506/120‑1 (MQ=255) gTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGtt > 3:201987/1‑149 (MQ=255) gCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGt > 6:44435/1‑126 (MQ=255) gCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGt < 5:44435/126‑1 (MQ=255) gCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTgga > 3:225605/1‑148 (MQ=255) gCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTg < 4:225605/147‑1 (MQ=255) | GCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCGTACCCGTGCAGGTGCGGGCTTGCC‑CGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGC‑TTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGG > NC_002947/1642140‑1642425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |