Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,642,431 | G→A | 7.1% | P771S (CCG→TCG) | lon‑I ← | DNA‑binding ATP‑dependent protease |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,642,431 | 0 | G | A | 7.1% | 161.5 / 2.1 | 56 | P771S (CCG→TCG) | lon‑I | DNA‑binding ATP‑dependent protease |
Reads supporting (aligned to +/- strand): ref base G (25/27); new base A (2/2); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 |
CCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCTTTTTTGGCAGACTGGTCGCGGGCCAGTGAGAGC > NC_002947/1642283‑1642576 | ccGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCgg < 3:232380/149‑1 (MQ=255) ccGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCgg < 3:176527/149‑1 (MQ=255) tGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAg > 6:228001/1‑149 (MQ=255) gcgCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCa < 3:203680/147‑1 (MQ=255) cGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGt < 4:293886/148‑1 (MQ=255) ttGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGaa > 1:33327/1‑148 (MQ=255) actcgcgAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGaaaa < 6:204338/145‑1 (MQ=255) gcgAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCCGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAAtcttc < 4:201987/149‑1 (MQ=255) gagGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGtt < 1:1899/133‑1 (MQ=255) gagGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGtt > 2:1899/1‑133 (MQ=255) gggCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCAGGCAGTATCAGTTCCAAAATCTTCTgcagcc > 1:62699/1‑149 (MQ=255) ggCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTACTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCGACGGCAGGCGCCTTGCGAAAATCGTCTGccgccg > 2:250623/1‑149 (MQ=255) gAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCt > 4:27759/1‑149 (MQ=255) cAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTtct > 4:133568/1‑149 (MQ=255) cAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTtct < 5:2383/149‑1 (MQ=255) aGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTtctc > 7:299961/1‑149 (MQ=255) aCTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGACAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCa > 2:132149/1‑135 (MQ=255) aCTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGACAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCa < 1:132149/135‑1 (MQ=255) cTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCgcgc < 4:72194/149‑1 (MQ=255) gCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCAcgcc > 8:36162/1‑149 (MQ=255) ccACGTCGGCAAAGCGCTTGGCGAAATGAACAGTAAGGACTTCGCGCATGTAGTCCGGCAGTTTTTCGAATTCGGCGCGGTTGGGCTCAGGCAGTATCATTTAGAAAATATTCTGCCGGCGCGCGGCAATACCCTTCTCGCGCAggccg > 8:92124/1‑149 (MQ=255) gTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGACAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCa > 2:170721/1‑148 (MQ=255) gCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCgccgcgccgc < 8:37360/119‑1 (MQ=255) gCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGATTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCgg > 7:200760/1‑149 (MQ=255) cAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGATTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGc < 8:200760/149‑1 (MQ=255) aaaGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCa < 2:33327/149‑1 (MQ=255) aaGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAg < 5:228001/149‑1 (MQ=255) tGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAg < 7:36162/149‑1 (MQ=255) cACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGACAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAgg < 1:170721/148‑1 (MQ=255) aCTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCa < 5:345819/64‑1 (MQ=255) aCTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCa > 6:345819/1‑64 (MQ=255) gCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGc < 3:133568/149‑1 (MQ=255) cTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGt > 8:127507/1‑122 (MQ=255) cTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGt < 7:127507/122‑1 (MQ=255) ttCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCg > 3:15317/1‑149 (MQ=255) gcgcAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCa > 5:77572/1‑149 (MQ=255) gcAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCAcgccgc < 4:159802/105‑1 (MQ=255) gcAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCAcgccgc > 3:159802/1‑105 (MQ=255) aGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGc < 8:299961/149‑1 (MQ=255) gTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCGGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGa > 7:302493/1‑149 (MQ=255) gTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCgcgc < 5:179972/94‑1 (MQ=255) gTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCgcgc > 6:179972/1‑94 (MQ=255) gTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGacac < 3:27759/149‑1 (MQ=255) tCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGccc > 5:286170/1‑135 (MQ=255) tCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGccc < 6:286170/135‑1 (MQ=255) cGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGc < 8:38180/131‑1 (MQ=255) cGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGc > 7:38180/1‑131 (MQ=255) aGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCtttttt < 2:62699/149‑1 (MQ=255) gTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCTTTTTTg > 8:139/1‑149 (MQ=255) cttcGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCTTTTTTGGc < 7:139/148‑1 (MQ=255) cGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCg < 6:4030/119‑1 (MQ=255) cGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCg > 5:4030/1‑119 (MQ=255) gAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCTTTTTTGGCAGACt > 3:60069/1‑149 (MQ=255) gccgcGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCTTTTTTg > 3:167895/1‑136 (MQ=255) gccgcGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCTTTTTTg < 4:167895/136‑1 (MQ=255) cgGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCTTTTTTGGCAGACTGGTCGCGGGc < 8:302493/149‑1 (MQ=255) tCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCTTTTTTGGCAGACTGGTCGCGGGCCAGTGagag > 8:145544/1‑149 (MQ=255) cGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCTTTTTTGGCAGACTGGTCGCGGGCCAGTGAGAGc < 6:77572/148‑1 (MQ=255) | CCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGTTCGAAAATCTTCTGCCGCCGCGCCGCAATCACCTTCTCGCGCACGCCGCCAATCGGCAGTACCTGGCCGGTGAGGGTCAGCTCGCCCGTCATGGCGACACCTTTTTTGGCAGACTGGTCGCGGGCCAGTGAGAGC > NC_002947/1642283‑1642576 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |