Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,667,919 | C→T | 14.5% | A307A (GCC→GCT) | ffh → | signal recognition particle GTPase subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,667,919 | 0 | C | T | 14.5% | 114.5 / 8.9 | 48 | A307A (GCC→GCT) | ffh | signal recognition particle GTPase subunit |
Reads supporting (aligned to +/- strand): ref base C (19/22); new base T (3/4); total (22/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 |
GCGCTGTCGGTACGTGCAATCACCGGCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCTCGGCGGCCTGATGGAC > NC_002947/1667773‑1668054 | gcgcTGTCGGTACGTGCAATCACCGGCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGcc > 6:327437/1‑147 (MQ=255) gTACGTGCAATCACCGGCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCAt < 5:327437/149‑1 (MQ=255) tACGTGCAATCACCGGCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATc < 3:243469/149‑1 (MQ=255) gTGCAATCACCGGCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAg > 6:85102/1‑137 (MQ=255) gTGCAATCACCGGCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAg < 5:85102/137‑1 (MQ=255) tGCAATCACCGGCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGAc > 2:144984/1‑148 (MQ=255) aTCACCGGCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGAcaaggc < 7:116026/149‑1 (MQ=255) tCACCGGCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGAcaaggc > 1:181153/1‑148 (MQ=255) gCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGAcaag < 1:284855/140‑1 (MQ=255) gCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGAcaag > 2:284855/1‑140 (MQ=255) taCCGATGAACTTGATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGAACGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGa > 2:79029/2‑148 (MQ=255) aaGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTgg < 2:181153/148‑1 (MQ=255) gTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCGGCCTGCTCGATCAGGCTGAGc < 4:82474/113‑1 (MQ=255) aTCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGaa > 4:230119/1‑149 (MQ=255) tGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTgaag < 3:160106/149‑1 (MQ=255) tGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTg > 5:286566/1‑146 (MQ=255) ggTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTgaagaa < 1:144984/149‑1 (MQ=255) agaagaCCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGaag‑ggc < 2:201302/149‑1 (MQ=255) gaagaCCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCGGCCTGCTCGATCAGGCTGAGCacg > 3:250016/1‑96 (MQ=38) gaagaCCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCGGCCTGCTCGATCAGGCTGAGCacg < 4:250016/98‑3 (MQ=38) cGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGaag‑ggcaag < 6:355184/145‑1 (MQ=255) cGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGaag‑ggcaag > 5:355184/1‑145 (MQ=255) cTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCt > 2:277829/1‑149 (MQ=255) tCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGaaa < 8:156243/122‑1 (MQ=255) tCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGaaa > 7:156243/1‑122 (MQ=255) ccACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTc < 1:32247/148‑1 (MQ=255) ccACCCCGACCGCCTCGCTTCGCGCATCCGCGGCATGGGCGACGTGCTCCGCCTGATCGAGCAGGACGAGCAGACCATCGACAAGTCCAAGGCCGACAACCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTc < 2:43855/148‑1 (MQ=255) aCCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCcgc < 6:286566/149‑1 (MQ=255) ccccGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGc < 2:332225/102‑1 (MQ=255) cGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGAc > 7:278977/1‑148 (MQ=255) cGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGAc < 8:278977/148‑1 (MQ=255) cgcgCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAGTGGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCaaa < 1:79029/148‑1 (MQ=255) gcgcATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGTCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATga < 1:277829/149‑1 (MQ=255) gcgcATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATg > 2:179769/1‑148 (MQ=255) tCGGCGTGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGaa > 8:267520/1‑113 (MQ=255) tCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCTAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGAc > 1:109592/1‑116 (MQ=255) tCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGAc < 2:109592/116‑1 (MQ=255) gCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCTc > 8:78018/1‑149 (MQ=255) tctGCTCGGCCTGCTCGATCAGGCTGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCTcggcg > 7:106493/3‑149 (MQ=255) cTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACTAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCTCGGCGGCCt > 6:301176/1‑149 (MQ=255) tcggCCTGCTCGATCAGGCTGAGCAGTCCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCt < 2:143332/136‑1 (MQ=255) tcggCCTGCTCGATCAGGCTGAGCAGGCCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCt > 1:143332/4‑139 (MQ=255) tCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCTCggcggc > 6:64244/1‑146 (MQ=255) tCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCTCggcggc < 5:64244/146‑1 (MQ=255) gCCTGCTCGATCAGGCTGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCTCGGCGGCCTGATg < 8:106493/149‑1 (MQ=255) gCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCTCGGCGGCCTGATg < 7:78018/149‑1 (MQ=255) ccTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAg < 2:4756/106‑1 (MQ=255) ccTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAg > 1:4756/1‑106 (MQ=255) gATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCTCGGCGGCCTGATGGAc > 6:41810/1‑148 (MQ=255) | GCGCTGTCGGTACGTGCAATCACCGGCAAACCGATCAAGTTCATCGGTATGGGTGAGAAGACCGAGGCCCTCGAGCCGTTCCACCCCGACCGCGTCGCTTCGCGCATCCTCGGCATGGGCGACGTGCTCAGCCTGATCGAGCAGGCCGAGCAGACCATCGACAAGGCCAAGGCCGACAAGCTGGCCAAGAAACTGAAGAAG‑GGCAAGGGCTTCGACCTCGAAGACTTCCGCGACCAGCTGCAGCAAATGAAGAACATGGGCGGCCTCGGCGGCCTGATGGAC > NC_002947/1667773‑1668054 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |