Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,751,081 | C→A | 19.2% | S147* (TCG→TAG) ‡ | PP_1551 → | replication protein O |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,751,081 | 0 | C | A | 19.2% | 49.0 / 4.1 | 29 | S147* (TCG→TAG) ‡ | PP_1551 | replication protein O |
Reads supporting (aligned to +/- strand): ref base C (7/16); new base A (4/2); total (11/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.64e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
CCGAAGGACTGGATTTACGTTGATCCGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTACTTGGCTGTCCGC > NC_002947/1750933‑1751226 | ccGAAGGACTGGATTTACGTTGATCCGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATcttccttc < 7:34361/149‑1 (MQ=255) aGGACTGGATTTACGTTGATCCGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGaa < 7:328299/149‑1 (MQ=255) tGGATTTACGTTGATCCGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCAGCCGCCCTTCGTTAGTCTAATAAAGCAACCCCCTATGTAACATCTTCCGAAGGAAGATg > 6:320224/1‑149 (MQ=255) aTTTACGTTGATCCGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTAc < 4:182556/149‑1 (MQ=255) tttACGTTGATCCGAAACAGACCAAAACAGCCTACTCGGATGAAGTGGTCCGAATCGTCTCATAGTCGAAACAGAACAAAACCGACGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTAc < 5:272977/148‑1 (MQ=255) tCCGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACGGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAACATCTTCCGAAGGAAGAT‑TTACAtagg < 7:128556/143‑4 (MQ=255) tCCGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACGGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAACATCTTCCGAAGGAAGAT‑TTACAtagg > 8:128556/1‑140 (MQ=255) ccGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGACCGACCCGATGTAA‑ATCTTCATTCGGAAGATGTTACATTCCCCCCCAg > 2:91944/1‑149 (MQ=255) cGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTACATGCCCCCCCAGc < 7:184008/149‑1 (MQ=255) cGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTACATGCCCCCCCAGc < 1:344990/149‑1 (MQ=255) gAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCGAAGGAAGAT‑TTACa > 3:226012/1‑135 (MQ=255) gAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCGAAGGAAGAT‑TTACa < 4:226012/135‑1 (MQ=255) ccGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGAAGAt > 8:13032/1‑113 (MQ=255) gACTCGGCTGAAGTGGTCCGACTCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAGCCCCCTATGTTA‑ATCTTACTTAGGAAGATGTTACTTTAAAGAACAGCGAGCCGGAGCCCACTcctg > 2:131595/1‑146 (MQ=255) gACTCGGCTGAAGTGGTCCGACTCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAGCCCCCTATGTAA‑ATCTTACTTCGGAAGATGTTAGATTCAACCCCAGCCAACCGGAGCCGCCACCGGc > 2:126460/1‑149 (MQ=255) cTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGAt < 7:194398/149‑1 (MQ=255) gAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAGGCCCCTATGTAA‑ATCTTCCGTCGGAAGATGGTAGATGCCGCCGCAGCGAGCCGGCGCCGACTCCGCCCAAGGATGa > 8:151995/1‑149 (MQ=255) tttATTCTAAGAAAGAGACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTACATGACCACCCAGAGCGCCGGAGCCCCCTCCGCCCACCGAAGAGCGCAAGGCGCCCGACGGCCAAGCCGCC‑ATGCTGGCCGACAAACCGCACgcggag > 4:215786/1‑144 (MQ=255) tttATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGTCGGCTCCGGctc < 1:62285/87‑3 (MQ=255) aTTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGa < 7:151995/148‑1 (MQ=255) ttCTAAGAAAGAAACCCCCTATGTAA‑TTCTTCCTTCGGAAGATGTTACATGCCCACCCTGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCATGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGAt < 1:277351/148‑1 (MQ=255) aagaaagaAACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCt < 3:313387/140‑1 (MQ=255) aagaaagaAACCCCCTATGTAA‑ATCTTACTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑AGCCTGGCCCACAAACCCCACCCGCTCGAGGCATc > 4:125890/1‑149 (MQ=255) agaaagaaACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAAt < 3:174565/147‑1 (MQ=255) cttAA‑ATCTTCCTTCGGAATATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTAc < 5:19740/146‑1 (MQ=255) aa‑aTCTTCCTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTACGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTat > 6:19740/1‑144 (MQ=255) aa‑aTCTTCCTTCGGAAGATGTTAAATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCCTTTGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTACtt < 1:91944/148‑1 (MQ=255) a‑aTCTTCCTTCGGAATATGTTACATGCCCCCCCAGCGATCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTACTTgg < 1:131595/148‑1 (MQ=255) a‑aTCTTCCTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTACTTgg < 3:125890/148‑1 (MQ=255) a‑aTCTTCCTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTACTTgg < 1:126460/148‑1 (MQ=255) ttccttcGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTACTTGGCTGTc > 7:63448/1‑149 (MQ=255) ttccttcGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTACTTGGCTGTc > 8:268978/1‑149 (MQ=255) cttcGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTACTTGGCTGTCCGc < 3:215786/149‑1 (MQ=255) ttcGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTACTTGGCTGTCCGc > 6:37099/1‑148 (MQ=255) | CCGAAGGACTGGATTTACGTTGATCCGAAACAGACCAAAACAGCCGACTCGGCTGAAGTGGTCCGAATCGGCTCAGAGTCGAAACAGACCAAAACCGCCGACTCCCTTCTTTATTCTAAGAAAGAAACCCCCTATGTAA‑ATCTTCCTTCGGAAGATGTTACATGCCCCCCCAGCGAGCCGGAGCCGACTCCGGCCAAGGATGAGCGCAAGGCTCCCTTCGGCAAAGCCGCC‑ATGCTGGCCGACAATCCGCACGGGCTCGATGAATCCCTGATCGCTGATTACTTGGCTGTCCGC > NC_002947/1750933‑1751226 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |