Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,039,704 | G→T | 19.4% | P33H (CCT→CAT) ‡ | PP_1812 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,039,704 | 0 | G | T | 19.4% | 68.4 / 10.2 | 31 | P33H (CCT→CAT) ‡ | PP_1812 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (13/12); new base T (3/3); total (16/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 |
GGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGG > NC_002947/2039573‑2039845 | ggAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAgg < 2:23850/149‑1 (MQ=255) tGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCgg > 5:144501/1‑149 (MQ=255) ggcgggcgTTGTAAGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAg > 7:221771/1‑149 (MQ=255) tAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGa < 1:10280/142‑1 (MQ=255) tAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGa > 2:10280/1‑142 (MQ=255) ggAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGc > 5:302236/1‑149 (MQ=255) ccGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGAtt > 2:222869/1‑149 (MQ=255) gggCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCg < 4:159882/149‑1 (MQ=255) gCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTgggtgggt > 6:207158/1‑119 (MQ=255) gCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTgggtgggt < 5:207158/119‑1 (MQ=255) gttccAGTGGGTATCGGACAAACGGTGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTgtgggtgg < 8:491/106‑1 (MQ=255) cAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGcc > 3:33075/1‑149 (MQ=255) gTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGACGCGTTTTGCTGACCGATTCGGTAACCATTCGCCg < 1:222869/149‑1 (MQ=255) tGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGGTTTGCTGACCGATTCGGTAACCATTCGCCgg < 6:144501/148‑1 (MQ=255) tCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTCGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTgggtgggt < 3:203653/99‑1 (MQ=255) tCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTCGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTgggtgggt > 4:203653/1‑99 (MQ=255) ggACAAACGGGGCTTGGGCTACAGGCACAAGGCCCGGGCCTTGTGCGGTCCGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGGGGGTGGGGGAAGTTGA‑GCGTTTTGCTGACCGCTTCGGTAACCATTCGCCGGGGTAGTTg < 6:340897/148‑1 (MQ=255) gACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTgtgggtgg > 7:222918/1‑94 (MQ=255) gACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTgtgggtgg < 8:222918/94‑1 (MQ=255) gggATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGc > 2:46422/1‑149 (MQ=255) gtttttGGGTTCCGGGACATGGCCTTGGCTTTGTGGGTTTTGGTCCGGGCCGTGCGGGGGGGAATTGGCCATGGTTTGGGGGTGGGTGAAGTTGT‑TCGTTTTGCTGACTGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCg < 8:221771/146‑1 (MQ=255) ctgaacgCACAAGGCCCTGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATtg < 1:113529/131‑1 (MQ=255) ctgaacgCACAAGGCCCTGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATtg > 2:113529/7‑137 (MQ=255) cAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCAGGCCGAGCGGGGCGGAAACGGCCACGGTTtgt < 7:87642/68‑1 (MQ=255) cAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCAGGCCGAGCGGGGCGGAAACGGCCACGGTTtgt > 8:87642/1‑68 (MQ=255) gCACAAGGCCCTGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGc > 8:273189/1‑134 (MQ=255) acaAGGCCCTGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCggg < 6:140239/115‑1 (MQ=255) acaAGGCCCTGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCggg > 5:140239/1‑115 (MQ=255) acaAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAg < 2:229750/138‑1 (MQ=255) acaAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAg > 1:229750/1‑138 (MQ=255) aaGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAgg > 5:185573/1‑149 (MQ=255) | GGAGGCTTACCGACTGGGGGAGGGCGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGTGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGA‑GCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGG > NC_002947/2039573‑2039845 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |