Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,160,917 | T→G | 8.2% | C219G (TGC→GGC) ‡ | pabC → | 4‑amino‑4‑deoxychorismate lyase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,160,917 | 0 | T | G | 8.2% | 146.8 / 5.2 | 49 | C219G (TGC→GGC) ‡ | pabC | 4‑amino‑4‑deoxychorismate lyase |
Reads supporting (aligned to +/- strand): ref base T (22/23); new base G (2/2); total (24/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.45e-01 |
GTGATCGAAGGGGTATACAGCAATCTGTTTCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGGCCCGCTCACTCGTAAACTGCAGGCCGTTGCCCGTAC > NC_002947/2160773‑2161062 | gTGATCGAAGGGGTATACAGCAATCTGTTTCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGa > 6:338837/1‑149 (MQ=255) gAAGGGGTTTACAGCAATCTGTTTCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCTGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGt < 8:294625/148‑1 (MQ=255) aaGGGGTATACAGCAATCTGTTTCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCg > 3:30372/1‑149 (MQ=255) tctaCAGCAATCGGTTTCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGGGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTTGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAg < 7:235944/147‑1 (MQ=255) aaTCTGTTTCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGa < 6:34272/140‑1 (MQ=255) aaTCTGTTTCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGa > 5:34272/1‑140 (MQ=255) aTCTGTTTCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAg < 6:174687/149‑1 (MQ=255) tttCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAg < 4:219786/148‑1 (MQ=255) tttCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCGCAGACCTGtacc > 6:294063/1‑127 (MQ=255) tttCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCGCAGACCTGtacc < 5:294063/130‑4 (MQ=255) tGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAAt > 4:232510/1‑149 (MQ=255) tGGGGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTTGAACAGGGCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTGGAGGCGCGGGAGCAAGCGAAt < 6:309309/149‑1 (MQ=255) gTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAAt < 5:81659/147‑1 (MQ=255) gTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATg > 8:178052/1‑148 (MQ=255) gTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGa < 4:30372/149‑1 (MQ=255) tGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCGCAGACCTGtacc < 1:17494/123‑4 (MQ=255) tGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCGCAGACCTGtacc > 2:17494/1‑120 (MQ=255) aTGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTAttt < 7:178052/149‑1 (MQ=255) gctTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTAGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCaa > 2:268137/1‑147 (MQ=255) cTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCAt > 1:258246/1‑149 (MQ=255) aGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGAACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTg > 1:227307/1‑149 (MQ=255) gCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTgg < 3:232510/149‑1 (MQ=255) tggcgtggcgGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCcgtg < 2:258246/148‑1 (MQ=255) gTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCcgc > 1:130822/1‑149 (MQ=255) gATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTAtttgttt < 1:288593/104‑1 (MQ=255) gATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTAtttgttt > 2:288593/1‑104 (MQ=255) aTGCGTTCCGCACTGCGGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCgcgc < 2:227307/148‑1 (MQ=255) ccGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTg < 6:304318/148‑1 (MQ=255) ccGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTg < 5:338837/148‑1 (MQ=255) ctgGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGc < 8:1523/71‑1 (MQ=255) ctgGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGc > 7:1523/1‑71 (MQ=255) ctgGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCggg > 5:155941/1‑149 (MQ=255) ggAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGt < 2:332429/123‑1 (MQ=255) ggAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGt > 1:332429/1‑123 (MQ=255) ggAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGGcc > 6:106798/1‑149 (MQ=255) aaCAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGTTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGGCCCg > 1:95995/1‑149 (MQ=255) cAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGGCCCGCt < 6:155941/149‑1 (MQ=255) cccGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGc > 2:63536/1‑101 (MQ=255) cccGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGc < 1:63536/101‑1 (MQ=255) ccGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGGCCCGCTCACTc > 5:360547/1‑148 (MQ=255) ccGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGGCCCGCTCACTc < 6:360547/148‑1 (MQ=255) gTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGGCCCGCTCACTCGTAAACTGCAg < 2:130822/149‑1 (MQ=255) aTTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCcgc > 4:190121/1‑107 (MQ=255) aTTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCcgc < 3:190121/107‑1 (MQ=255) aGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGGCCCGCTCACTCGTAAACTGCAGGCCGTTGCCCg > 4:177941/1‑148 (MQ=255) aGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGCCCCGCTCACTCGTAAACTGCAGGCCGTTGCCCg > 8:86567/1‑148 (MQ=255) gTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTAc > 1:313736/1‑66 (MQ=255) gTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTAc < 2:313736/66‑1 (MQ=255) gTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGGCCCGCTCACTCGTAAACTGCAGGCCGTTGCCCGTAc > 4:102906/1‑149 (MQ=255) | GTGATCGAAGGGGTATACAGCAATCTGTTTCTGGTGCGCGATGGCGTGCTGCTTACCGCCGACCTTAGCCGTTGTGGCGTGGCGGGCGTGATGCGTGCCGCACTGCTGGAACAGGCCCCGCTGCTGGGTATTGCGGTACAGGTCTGCGACCTGTCGTTCGAGGCGCTGGAGCAAGCGAATGAAGTATTTGTTTGCAATAGCGTTTACGGCATTTGGCCCGTGCGTGGCGTAGCCGCGCTAAACTGGTCGCCGGGCCCGCTCACTCGTAAACTGCAGGCCGTTGCCCGTAC > NC_002947/2160773‑2161062 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |