| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,242,665 | G→C | 11.4% | A80P (GCC→CCC) | PP_1978 → | TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,242,665 | 0 | G | C | 11.4% | 205.3 / 15.2 | 70 | A80P (GCC→CCC) | PP_1978 | TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (33/29); new base C (4/4); total (37/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
GTCAGGTGATGGGTGCGGCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGT > NC_002947/2242519‑2242812 | gtcagGTGATGGGTGCGGCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGcc > 1:303243/1‑149 (MQ=255) agGTGATGGGTGCGGCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCggg > 5:350645/1‑149 (MQ=255) gTGATGGGTGCGGCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGATTATAGATCGAAGCGTTACGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCTATGGCGCCGggc > 1:108275/1‑149 (MQ=255) tGCGGCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCCCCGGccagcgctcgc > 6:224331/1‑144 (MQ=255) tGCGGCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCCCCGGccagcgctcgc > 6:106073/1‑144 (MQ=255) gCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGc < 6:70603/149‑1 (MQ=255) cAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGcc > 8:221201/1‑149 (MQ=255) cAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGcc > 8:219251/1‑149 (MQ=255) gCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCggg < 6:189719/149‑1 (MQ=255) gCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCggg < 6:116511/149‑1 (MQ=255) aCCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑tt < 2:215562/149‑1 (MQ=255) aCCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCCCCGGCCAGCGCTCGCCGCCCGGCGccat < 5:224331/149‑3 (MQ=255) aCCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCCCCGGCCAGCGCTCGCCGCCCGGCGccat < 5:106073/149‑3 (MQ=255) cGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCt < 2:108275/149‑1 (MQ=255) tCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTAc < 5:116053/149‑1 (MQ=255) gcggcTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGGTCGCCCCAGATCGACCCCAATCTCGATGGCGCCGggc < 1:223347/121‑1 (MQ=255) gcggcTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGggc > 2:223347/1‑120 (MQ=255) cggcTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACctct < 2:303243/149‑1 (MQ=255) ttCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTcgcg > 5:109846/1‑149 (MQ=255) ttCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCCCCGGCCAGCGCTCGCCGCCCGGCGcc > 5:104455/1‑135 (MQ=255) ttCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCCCCGGCCAGCGCTCGCCGCCCGGCGcc < 6:104455/135‑1 (MQ=255) tGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAg > 5:175595/1‑148 (MQ=255) aCTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCgg > 5:30342/1‑149 (MQ=255) ttCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCC‑ATcga > 6:167376/1‑126 (MQ=25) ttCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCC‑ATcga < 5:167376/128‑3 (MQ=25) aCAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGc < 2:238532/149‑1 (MQ=255) cAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAg > 3:208441/1‑149 (MQ=255) cAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAg > 7:224438/1‑149 (MQ=255) aaGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGt < 8:224438/149‑1 (MQ=255) ggACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTa > 5:182962/1‑148 (MQ=255) ggACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTAc < 7:219251/149‑1 (MQ=255) ggACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTAc < 7:221201/149‑1 (MQ=255) gCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCtt < 6:350645/149‑1 (MQ=255) ttAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATg < 6:294326/144‑1 (MQ=255) ttAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATg > 5:294326/1‑144 (MQ=255) aT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGc < 2:8186/147‑1 (MQ=255) gCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCgg > 8:187601/1‑124 (MQ=255) gCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATg > 1:152895/1‑140 (MQ=255) gCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATg < 2:152895/140‑1 (MQ=255) gAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTc > 2:126576/1‑99 (MQ=255) ttCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAAcgc > 5:352591/1‑149 (MQ=255) ccAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTgg > 4:236370/1‑149 (MQ=255) cAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTggg < 3:64391/149‑1 (MQ=255) ttgttgGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTgg < 1:156618/145‑1 (MQ=255) ttgttgGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTgg > 2:156618/1‑145 (MQ=255) gttgGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATAGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATTCTTGCCCGCTGCCTAACGCGTTGGGCGaaa > 7:122464/1‑149 (MQ=255) ttgGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGt < 4:183187/113‑1 (MQ=255) ttgGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGt > 3:183187/1‑113 (MQ=255) gggTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATg > 6:24018/1‑148 (MQ=255) cgcCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCt < 4:208441/149‑1 (MQ=255) ccTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGa < 5:24018/148‑1 (MQ=255) cTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTa < 2:346215/66‑1 (MQ=255) cTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTa > 1:346215/1‑66 (MQ=255) cTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAgg > 6:269925/1‑149 (MQ=255) tCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAg < 7:254600/131‑1 (MQ=255) tCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAg > 8:254600/1‑131 (MQ=255) tCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTc > 3:4938/1‑149 (MQ=255) g‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCcg > 5:94529/1‑149 (MQ=255) ccAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCcgc > 4:90491/1‑148 (MQ=255) gATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAgg > 2:43756/1‑149 (MQ=255) aTCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGccc > 6:181220/1‑95 (MQ=255) aTCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGccc < 5:181220/95‑1 (MQ=255) ccccAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTgg < 3:236370/149‑1 (MQ=255) ccccAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTgg > 4:175180/1‑149 (MQ=255) ccccAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTgg < 4:4938/149‑1 (MQ=255) cccAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTTCCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGa < 1:286914/128‑1 (MQ=255) cccAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGa > 2:286914/1‑128 (MQ=255) cAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGcc > 7:293030/1‑148 (MQ=255) aaTCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGa < 3:175180/149‑1 (MQ=255) gATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGc < 6:182962/145‑1 (MQ=255) cgcCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGt < 6:94529/149‑1 (MQ=255) cgcCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGt < 8:293030/149‑1 (MQ=255) gcCGGGCGGCGAGCGCTGGCCGGGGCCGTTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGt > 1:192631/1‑149 (MQ=255) | GTCAGGTGATGGGTGCGGCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTAT‑GCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCG‑CCCAGATCGACCCCAATCTCGATGGCGCCGGGCGGCGAGCGCTGGCCGGGGCC‑TTCTACCTCTCGCGCAAGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGT > NC_002947/2242519‑2242812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |