| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,282,812 | C→A | 7.3% | intergenic (‑204/+25) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,282,812 | 0 | C | A | 7.3% | 193.7 / 4.4 | 67 | intergenic (‑204/+25) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (35/27); new base A (3/2); total (38/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.83e-01 | |||||||||||
CGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGC > NC_002947/2282692‑2282960 | ccccAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGTAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCa < 7:201637/146‑1 (MQ=255) ccAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGt > 1:242850/1‑148 (MQ=255) ttttaaaatTGTGTCGCCAGCCACCTGCGTCTTCGCGGCCACGCCCGCTCCCACAGTCCAACTGCACTTTCTTGGACGCCTGTGCTGTTGGAGTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCggg < 8:231120/144‑1 (MQ=21) tgtTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCa < 2:242850/149‑1 (MQ=255) cccGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGcc‑‑t > 4:325080/1‑149 (MQ=255) ccGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGaaa < 5:40635/134‑1 (MQ=255) ccGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGaaa > 6:40635/1‑134 (MQ=255) tCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGc > 7:310721/1‑149 (MQ=255) cacaGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAg > 6:324191/1‑149 (MQ=255) acaGTCCAACAGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCt > 2:296014/1‑136 (MQ=255) acaGTCCAACAGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCt < 1:296014/136‑1 (MQ=255) cAACTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCAt > 6:301081/1‑149 (MQ=255) aaCTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGtt < 8:46844/83‑1 (MQ=255) aaCTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATc > 7:201496/1‑149 (MQ=255) aaCTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATc > 5:339185/1‑149 (MQ=255) aaCTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGa > 4:108203/1‑75 (MQ=11) aaCTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGa < 3:108203/75‑1 (MQ=11) aaCTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAg > 2:116882/1‑102 (MQ=18) aaCTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAg < 1:116882/102‑1 (MQ=18) aaCTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAg > 6:61428/1‑141 (MQ=255) aaCTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAg < 5:61428/141‑1 (MQ=255) aaCTGCACAGGCTTCCAAGACTGAGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAggg > 7:284418/1‑98 (MQ=18) aaCTGCACAGGCTTCCAAGACTGAGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAggg < 8:284418/98‑1 (MQ=18) aCTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCg > 4:309632/1‑149 (MQ=255) tGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGcc‑‑tc > 4:179088/1‑131 (MQ=255) tGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCgg > 6:7491/1‑148 (MQ=255) tGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCgg > 8:204375/1‑148 (MQ=255) gCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGTGCCAGTCAACACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCa > 6:329586/1‑149 (MQ=37) cacaGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGTGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCAGCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGc < 1:67882/147‑1 (MQ=255) cacaGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACAt > 3:193846/1‑73 (MQ=255) cacaGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGc < 3:325080/147‑1 (MQ=255) cacaGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGc < 1:46267/138‑1 (MQ=255) cacaGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGc > 2:46267/1‑138 (MQ=255) cacaGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCAt > 3:336385/1‑149 (MQ=37) acaGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCGGTGGCTGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCAt > 5:113680/1‑149 (MQ=21) tGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCa > 5:296171/1‑78 (MQ=255) tGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCa < 6:296171/78‑1 (MQ=255) ggAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCAc > 7:330967/1‑147 (MQ=255) gAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAg > 5:355314/1‑149 (MQ=255) aaGCCTGTGCAGTTGGACGGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGt < 8:330967/149‑1 (MQ=255) gCCTGTGCAGTTGGTCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGc < 4:207069/120‑1 (MQ=255) cTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAg > 4:65507/1‑137 (MQ=255) cTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAg < 3:65507/137‑1 (MQ=255) cAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAg > 3:110805/1‑148 (MQ=255) gTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCaa < 8:310721/149‑1 (MQ=255) ttGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCa < 4:199614/128‑1 (MQ=255) ttGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCa > 3:199614/1‑128 (MQ=255) ttGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAg > 2:35430/1‑149 (MQ=255) ggACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGt < 5:301081/148‑1 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGcc > 4:70923/1‑149 (MQ=255) tgtgGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGcc > 3:14243/1‑149 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGc > 7:16187/1‑95 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGc < 8:16187/95‑1 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCgg > 5:124638/1‑149 (MQ=255) ggAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGt < 3:70923/148‑1 (MQ=255) aGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTAcc < 1:4802/131‑1 (MQ=255) aGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTAcc > 2:4802/1‑131 (MQ=255) aGCGGGCGTGCCAGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGcc > 1:280612/1‑149 (MQ=255) gCGGGCGTGCCAGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCct < 2:280612/149‑1 (MQ=255) cGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCctg < 2:282366/149‑1 (MQ=255) gggCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGTAACTGGGGGGTGGGGCCGGGGCTGCCAGGCACAATCGGCAACAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGc > 1:286116/1‑149 (MQ=255) gggCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCctgc < 1:135691/149‑1 (MQ=255) gCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCctgctg > 6:265931/1‑149 (MQ=255) gTGCGCGCGAAGGGGCCGG‑AGGAGGCGACATCAGTTACCTGGCAGATAGGGCCAGTCATCACCCAGCAGATAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCTGTCGTACCATCAAGTGCGCCGGTGCct < 5:121003/143‑1 (MQ=255) gTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCCCCAGTCGTACCAGCATGTGCGCCGGTGCct > 6:121003/1‑143 (MQ=255) gTGCCAGCGAAGAGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTgctgct < 4:336385/149‑1 (MQ=255) tGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTc < 6:124638/149‑1 (MQ=255) cccGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTcc < 5:324191/148‑1 (MQ=255) ccGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCctgc < 6:166504/141‑1 (MQ=255) ccGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCctgc > 5:166504/1‑141 (MQ=255) ccGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTc > 2:198863/1‑146 (MQ=255) ccGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCa < 1:198863/148‑1 (MQ=255) cgcgAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTAc > 2:297635/1‑118 (MQ=255) cgcgAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTAc < 1:297635/118‑1 (MQ=255) cgcgAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGc < 6:339185/149‑1 (MQ=255) | CGCCAGGTCTGTGAAAAATGTGTTGCCAGCCACCGGCCTCTTCGCTGGCACGCCCGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAAC‑‑ACCCGTTCTGCC‑‑TCCTGCCAGGCACCATCGGCATCAGGCACCAGTCGTACCAGCAAGTGCGCCGGTGCCTGCTGCTCCAGC > NC_002947/2282692‑2282960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |