Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,313,672 | A→T | 7.1% | L139Q (CTG→CAG) | benE‑I ← | benzoate transport protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,313,672 | 0 | A | T | 7.1% | 168.2 / 3.2 | 56 | L139Q (CTG→CAG) | benE‑I | benzoate transport protein |
Reads supporting (aligned to +/- strand): ref base A (25/27); new base T (2/2); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.17e-01 |
GCAGTATGGCGACCACGGCGTAACGGGCGGTGAAGCGTTTGAAAGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAGGGCGGTGACCAAGAA > NC_002947/2313535‑2313820 | gcagTATGGCGACCACGGCGTAACGGGCGGTGAAGCGTTTGAAAGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCcggcg < 1:264455/149‑1 (MQ=255) ccACGGCGTAACGGGCGGTGAAGCGTTTGAAAGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCTGCGGCAA‑Tgccgcc < 8:7975/148‑1 (MQ=255) gggCGGTGAAGCGTTTGAAAGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTAcgcg > 3:261660/1‑148 (MQ=255) gggCGGTGAAGCGTTTGAAAGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGACAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCcagca < 4:328381/117‑1 (MQ=255) gggCGGTGAAGCGTTTGAAAGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGACAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCcagca > 3:328381/1‑117 (MQ=255) ggTGAAGCGTTTGAAAGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCAc > 6:156853/1‑147 (MQ=255) gTTTGAAAGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCg < 4:261660/149‑1 (MQ=255) tGAAAGCGTCTTACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAATGGCACCGATGCCGAACTGCAGCATGATGCCGGCCAGCAGGCCGGCGGCAT‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGaa < 6:182366/148‑1 (MQ=255) tGAAAGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGaa < 1:153754/148‑1 (MQ=255) aaaGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCggg < 5:73549/122‑1 (MQ=255) aaaGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCggg > 6:73549/1‑122 (MQ=255) aGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAATTGCCGCCGGGCACTACGCGCACCAGCCGCt < 1:31540/141‑1 (MQ=255) aGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCt > 2:31540/1‑140 (MQ=255) gCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGccc > 5:167921/1‑149 (MQ=255) tGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGccc > 1:230493/1‑147 (MQ=255) tGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCa > 8:131925/1‑149 (MQ=255) cAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAg < 5:355921/148‑1 (MQ=255) tCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGcac > 3:301532/1‑148 (MQ=255) gCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCcagcag > 2:169421/1‑79 (MQ=255) gCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGc > 3:296443/1‑101 (MQ=255) gCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGc < 4:296443/101‑1 (MQ=255) aaCCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACg > 3:299358/1‑147 (MQ=255) aCCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAg > 1:228944/1‑149 (MQ=255) ggCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGTCCCAGCACCACGAAGCCGGCGGcc > 8:248389/1‑149 (MQ=255) tGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGaa > 1:331171/1‑109 (MQ=255) tGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGaa < 2:331171/109‑1 (MQ=255) ggTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGAc > 6:160694/1‑146 (MQ=255) ggTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGAc < 5:160694/146‑1 (MQ=255) gTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGAcagca < 4:299358/149‑1 (MQ=255) tCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGTCCCAGCACCACGAAGCCGGCGGCCGAcagcag < 7:248389/149‑1 (MQ=255) accgacAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTa < 5:156853/149‑1 (MQ=255) cgacAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAgg < 6:167921/149‑1 (MQ=255) cgacAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAgg > 1:127676/1‑149 (MQ=255) tGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATg > 4:106070/1‑149 (MQ=255) gCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGc < 2:127676/149‑1 (MQ=255) aaaGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGaa < 7:214935/87‑1 (MQ=255) aaaGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGaa > 8:214935/1‑87 (MQ=255) aCCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGAcagcag < 5:291212/126‑1 (MQ=255) aCCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGAcagcag > 6:291212/1‑126 (MQ=255) aCCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTg > 5:81713/1‑148 (MQ=255) aTGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCt < 8:220852/139‑1 (MQ=255) aTGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCt > 7:220852/1‑139 (MQ=255) cGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATCGCCTCGCTGTAGGGCACg > 6:249105/1‑149 (MQ=255) cagcagGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGc < 5:249105/147‑1 (MQ=255) agcagGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAg < 2:230493/149‑1 (MQ=255) agGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGCAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAGGGc < 7:131925/149‑1 (MQ=255) ccgCCGGCCTGCTGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCt > 7:314428/3‑137 (MQ=255) ccgCCGGCCTGCTGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCt < 8:314428/135‑1 (MQ=255) aatatggCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAGGGCg < 4:227015/142‑1 (MQ=255) tGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAGGGCGGTg < 6:81713/149‑1 (MQ=255) gCCGGCCTGCTGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCt < 5:101541/135‑1 (MQ=255) gCCGGCCTGCTGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCt > 6:101541/1‑135 (MQ=255) ccGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGa > 7:127720/1‑95 (MQ=255) ccGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGa < 8:127720/95‑1 (MQ=255) ccGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAGGGCGGTGa < 8:139069/148‑1 (MQ=255) cGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAGGGCGGTGAc > 4:51639/1‑148 (MQ=255) gCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAggg > 2:215541/1‑139 (MQ=255) gCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAggg < 1:215541/139‑1 (MQ=255) ccAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAGGGCGGTGAcc > 7:75424/1‑146 (MQ=255) agcagGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAGGGCGGTGACCAAGaa > 8:191235/1‑149 (MQ=255) | GCAGTATGGCGACCACGGCGTAACGGGCGGTGAAGCGTTTGAAAGCCACATACGCTGCAATCAGCAACCCGGCGAGGCTGGGGTCGACCGACAGGCTGGCAAAGGCACCGATGCCGAACTGCAGCAGGATGCCGGCCAGCAGGCCGGCGGCAA‑TGCCGCCGGGCACTACGCGCACCAGCCGCTCGAAGCACCCGCTCAGCCCCAGCACCACGAAGCCGGCGGCCGACAGCAGGTAGGCACCTATGGCCTCGCTGTAGGGCACGCTGGCCAGGGCGGTGACCAAGAA > NC_002947/2313535‑2313820 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |