BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,405,351	G→C	6.0%	V116V (GTG→GTC) ‡	PP_2108 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,405,351	0	G	C	6.0%	321.3 / 6.9	99	V116V (GTG→GTC) ‡	PP_2108	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (49/44); new base C (3/3); total (52/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01

Only 100 of 101 total aligned reads displayed.

GCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTCGAGGTGAAGC  >  NC_002947/2405212‑2405499

gcgcCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCg                                                                                                                                              >  7:11647/1‑149 (MQ=255)

 cgcCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCgg                                                                                                                                             <  3:97426/149‑1 (MQ=255)

  gcCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGt                                                                                                                                            >  7:330089/1‑149 (MQ=255)

  gcCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGCACCCATCTGTc                                                                                                                                               >  5:25710/1‑146 (MQ=255)

  gcCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGCACCCATCTGTc                                                                                                                                               <  6:25710/146‑1 (MQ=255)

   ccTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTg                                                                                                                                           <  2:86173/149‑1 (MQ=255)

    cTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGa                                                                                                                                          >  7:174492/1‑149 (MQ=255)

       cGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CTGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGAcg                                                                                                                                        <  8:330089/148‑1 (MQ=255)

        gATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGc                                                                                                                                                      >  5:9454/1‑133 (MQ=255)

        gATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGc                                                                                                                                                      <  6:9454/133‑1 (MQ=255)

             ccAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGTGCAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCgg                                                                                                                                   >  1:73297/1‑148 (MQ=255)

             ccAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACGGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCa                                                                                                                                 >  6:192766/1‑149 (MQ=255)

                       cAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCgcag                                                                                                                       <  2:257121/149‑1 (MQ=255)

                           ggCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTg                                                                                                                                                       >  6:244214/1‑113 (MQ=255)

                             cTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGt                                                                                                                 <  1:94495/149‑1 (MQ=255)

                             cTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGt                                                                                                                 <  8:11647/149‑1 (MQ=255)

                               ggcggcGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCTAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCgcgc                                                                                                                         <  5:90466/139‑1 (MQ=255)

                               ggcggcGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCgcgc                                                                                                                         >  6:90466/1‑139 (MQ=255)

                                 cggcggACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTg                                                                                                             <  4:231405/149‑1 (MQ=255)

                                         ttCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAACTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATgcg                                                                                                     >  2:86025/1‑149 (MQ=255)

                                            aCGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGATAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCa                                                                                                   >  1:326904/1‑148 (MQ=255)

                                            aCGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCa                                                                                                   >  7:160447/1‑148 (MQ=255)

                                            aCGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCa                                                                                                   >  3:288750/1‑148 (MQ=255)

                                              ggTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAg                                                                                                >  7:50361/1‑149 (MQ=255)

                                              ggTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAg                                                                                                >  6:107072/1‑149 (MQ=255)

                                              ggTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAg                                                                                                <  8:174492/149‑1 (MQ=255)

                                                    cGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGAcc                                                                                                          <  4:165372/133‑1 (MQ=255)

                                                    cGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGAcc                                                                                                          >  3:165372/1‑133 (MQ=255)

                                                    cGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCg                                                                                          >  2:99126/1‑149 (MQ=255)

                                                      aGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGc                                                                                        <  8:50361/149‑1 (MQ=255)

                                                         t‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTAc                                                                                     <  8:160447/149‑1 (MQ=255)

                                                             gCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTg                                                                                  >  2:83165/1‑149 (MQ=255)

                                                             gCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTg                                                                                  >  3:256350/1‑149 (MQ=255)

                                                               ccGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGACAGCGGCTACCTGGc                                                                                >  4:22661/1‑149 (MQ=255)

                                                               ccGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGCACCCATCTGTc                                                                                                                                               <  5:152520/86‑1 (MQ=255)

                                                               ccGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGCACCCATCTGTc                                                                                                                                               >  6:152520/1‑86 (MQ=255)

                                                                cgcgcgAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGATAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCg                                                                               <  2:326904/149‑1 (MQ=255)

                                                                 gcgcgAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCgg                                                                              <  1:141095/149‑1 (MQ=255)

                                                                 gcgcgAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCgg                                                                              <  1:99126/149‑1 (MQ=255)

                                                                   gcgAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCggg‑g                                                                           <  5:192766/149‑1 (MQ=255)

                                                                   gcgAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCggg‑g                                                                           <  4:256350/149‑1 (MQ=255)

                                                                    cgAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑Gc                                                                          <  2:73297/149‑1 (MQ=255)

                                                                     gagaCCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCt                                                                         >  7:320726/1‑149 (MQ=255)

                                                                        aCCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGc                                                                       >  7:40823/1‑148 (MQ=255)

                                                                           gTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCaaag                                                                   >  3:90976/1‑147 (MQ=255)

                                                                           gTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCa                                                                      <  4:90976/146‑1 (MQ=255)

                                                                               ggCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCgcaggc                                                                                                                     >  8:166457/1‑96 (MQ=255)

                                                                               ggCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCgcaggc                                                                                                                     <  7:166457/96‑1 (MQ=255)

                                                                                gCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGaa                                                                 >  6:172333/1‑146 (MQ=255)

                                                                                gCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGaa                                                                 <  5:172333/146‑1 (MQ=255)

                                                                                     tCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGTATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCAtt                                                          >  8:143496/1‑148 (MQ=255)

                                                                                     tCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGc                                                                                >  1:339971/1‑127 (MQ=255)

                                                                                     tCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGc                                                                                <  2:339971/127‑1 (MQ=255)

                                                                                       aGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGCTGCATCTGTCGGTGACGCGAGGCACGCCGCGCAGGCAGGTGCTGACAATGCGCAAAGGCAGCCGCTACCAGGCTGG‑GCTGCAATGAAGCGCAATGAc                                                       >  2:70649/1‑149 (MQ=255)

                                                                                        gCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACg                                                      >  3:148656/1‑149 (MQ=255)

                                                                                           aaaGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGAGGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACgg                                                     >  2:46693/1‑147 (MQ=255)

                                                                                             aGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGgcagc                                                 <  5:107072/149‑1 (MQ=255)

                                                                                              gTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGgcagc                                                 >  5:50237/1‑148 (MQ=255)

                                                                                                  ggTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAggg                                            >  6:135327/1‑149 (MQ=255)

                                                                                                      cccTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATg                                        >  1:220366/1‑149 (MQ=255)

                                                                                                         ttCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCgg                                                                              >  3:310783/1‑109 (MQ=255)

                                                                                                         ttCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCgg                                                                              <  4:310783/109‑1 (MQ=255)

                                                                                                         ttCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTc                                     >  5:239146/1‑149 (MQ=255)

                                                                                                           cGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTc                                     <  5:135327/147‑1 (MQ=255)

                                                                                                             aTCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATAAAGCGCATTGACGGCAGCAAGGGGATGTTCGTAt                                 <  1:46693/149‑1 (MQ=255)

                                                                                                               cAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGc                               >  8:320695/1‑149 (MQ=255)

                                                                                                                aGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCt                              <  8:320726/149‑1 (MQ=255)

                                                                                                                aGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCt                              <  4:288750/149‑1 (MQ=255)

                                                                                                                aGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCt                              <  6:50237/149‑1 (MQ=255)

                                                                                                                 gCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCt                                                                         <  6:261335/105‑1 (MQ=255)

                                                                                                                  cTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTg                             >  6:322439/1‑148 (MQ=255)

                                                                                                                  cTGATCCTGGAACTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGt                            <  1:86025/149‑1 (MQ=255)

                                                                                                                     aTCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGGCGCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGta                           <  1:83165/148‑1 (MQ=255)

                                                                                                                       ccTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCt                                                                                   >  5:46033/1‑90 (MQ=255)

                                                                                                                       ccTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCt                                                                                   <  6:46033/90‑1 (MQ=255)

                                                                                                                         tGGAATTCGACGGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATaaa                     >  3:107851/1‑149 (MQ=255)

                                                                                                                         tGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCAt                                                           <  7:95940/111‑1 (MQ=255)

                                                                                                                         tGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACgg                                                     >  2:171558/1‑117 (MQ=255)

                                                                                                                         tGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATaaa                     >  7:251598/1‑149 (MQ=255)

                                                                                                                             aTTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGACAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACa                 <  3:22661/149‑1 (MQ=255)

                                                                                                                                cGACAGATGCACCCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGaa                                                                 <  2:229420/98‑1 (MQ=255)

                                                                                                                                cGACAGATGCACCCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGaa                                                                 >  1:229420/1‑98 (MQ=255)

                                                                                                                                 gACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCa                                                                      <  6:216859/92‑1 (MQ=255)

                                                                                                                                 gACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCa                                                                      >  5:216859/1‑92 (MQ=255)

                                                                                                                                 gACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAgtgt             >  5:57827/1‑149 (MQ=255)

                                                                                                                                 gACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAgtgt             >  4:155930/1‑149 (MQ=255)

                                                                                                                                 gACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAgtg              <  5:322439/148‑1 (MQ=255)

                                                                                                                                  aCAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAATCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTc            >  4:42082/1‑149 (MQ=255)

                                                                                                                                  aCAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTc            <  7:320695/149‑1 (MQ=255)

                                                                                                                                    aGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTc            >  1:102025/1‑147 (MQ=255)

                                                                                                                                      aTGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCgg                                                                              <  1:341874/80‑1 (MQ=255)

                                                                                                                                      aTGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCgg                                                                              >  2:341874/1‑80 (MQ=255)

                                                                                                                                         ggTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTCGAGGTg      >  4:80078/1‑148 (MQ=255)

                                                                                                                                          gTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGtatata                       <  2:169598/130‑1 (MQ=255)

                                                                                                                                          gTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGtatata                       >  1:169598/1‑130 (MQ=255)

                                                                                                                                          gTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTCGAg         <  6:197024/144‑1 (MQ=255)

                                                                                                                                          gTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTCGAg         >  5:197024/1‑144 (MQ=255)

                                                                                                                                          gTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTCGAGGTGaa    <  6:195700/149‑1 (MQ=255)

                                                                                                                                           tGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTCGAGGTGAAg   <  3:42082/149‑1 (MQ=255)

                                                                                                                                            gCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTCGAGGTGAAGc  >  3:157212/1‑149 (MQ=255)

GCGCCTCCGATAGCCAGCACGTGCAAGGGCTGGCGGCGGACTTCACGGTGATCGAGGT‑CAGCCCGCGCGAGACCGTCCGGCGAATCAGCAAAAGTGCGGTGCCCTTCGATCAGCTGATCCTGGAATTCGACAGATGGGTGCATCTGTCGGTGACGCGCGGCACGCCGCGCAGGCAGGTGCTGACCATGCGCAAAGGCAGCGGCTACCTGGCGGG‑GCTGCAATGAAGCGCATTGACGGCAGCAAGGGGATGTTCGTATGCTGTATATAAATACAGTGTCGAGGTGAAGC  >  NC_002947/2405212‑2405499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`