| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,412,905 | G→C | 5.3% | intergenic (+169/‑252) | rlmM → / → PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,412,905 | 0 | G | C | 5.3% | 294.1 / 6.2 | 95 | intergenic (+169/‑252) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
| Reads supporting (aligned to +/- strand): ref base G (51/37); new base C (2/3); total (53/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.85e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
CTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCC > NC_002947/2412758‑2413052 | ctgcgtctgcgtCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCat‑gga > 6:30379/1‑149 (MQ=255) cgtctgcgtctgCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCat‑ggatgg < 4:136773/149‑1 (MQ=255) gtctgcgtctgcTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATggg < 3:58163/149‑1 (MQ=255) tctgcgtctgcTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATgggg < 2:145131/149‑1 (MQ=255) cgcgtctgcTTCGGCTTTTGCTGTTTCTTCTACGCGCTCGATAGTTCAGGCGAAGCAGATTGCGACTTCTGGAGGCAGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGGATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GTATGGGGcc < 4:194150/148‑1 (MQ=14) gcgtctgcTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCat‑ggatgg > 8:148524/1‑144 (MQ=255) gcgtctgcTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCat‑ggatgg < 7:148524/144‑1 (MQ=255) cgtctgcTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTg > 2:47072/1‑149 (MQ=255) gtctgcTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGc < 7:132995/149‑1 (MQ=255) cttctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAgcgc < 4:108182/149‑1 (MQ=255) ttctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCat‑ggatgg < 4:213202/136‑1 (MQ=255) ttctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCat‑ggatgg > 3:213202/1‑136 (MQ=255) ttctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATgggg < 6:103798/138‑1 (MQ=255) tctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGcgcg > 5:9971/1‑148 (MQ=255) tctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGcgcg > 3:312611/1‑148 (MQ=255) ctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCat‑ggatgg > 2:162045/1‑134 (MQ=255) ctgcttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGt < 2:49843/148‑1 (MQ=255) ctgcttTTGATTTTGCTTCTAAGCGCGCTATAGTTCAGGCGACGCAGATTGCTAGTTCAGGAGTCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAgcgc < 4:133859/146‑1 (MQ=11) cttTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTa < 5:30379/146‑1 (MQ=40) ttttGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAAGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTcc > 8:206321/1‑149 (MQ=255) gCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGCGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCgg < 7:334046/148‑1 (MQ=37) gCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCgg < 2:113511/148‑1 (MQ=37) cTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGa < 1:102612/149‑1 (MQ=37) tGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCa < 5:287730/132‑1 (MQ=37) tGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCa > 6:287730/1‑132 (MQ=37) tGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAg > 1:132810/1‑149 (MQ=35) gTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGTCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCat‑ggatg < 2:171629/122‑1 (MQ=25) gTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGTCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCat‑ggatg > 1:171629/1‑122 (MQ=25) ttGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAg < 2:218558/147‑1 (MQ=34) ttGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGc > 1:66405/1‑148 (MQ=34) gCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCaa < 2:24626/148‑1 (MQ=34) ttCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGCAGGCCCCAT‑CCATGGGGCCT‑CAgcgcttgacg > 6:190355/1‑130 (MQ=11) ttCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAgcgc > 8:110115/1‑130 (MQ=35) ttCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAgcgc < 7:110115/130‑1 (MQ=35) ttCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGcc > 2:89709/1‑149 (MQ=35) ttCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGcc > 5:213780/1‑149 (MQ=35) ttCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGcc > 7:300271/1‑149 (MQ=35) tCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGccc > 6:16238/1‑149 (MQ=37) tAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCgg > 2:324491/1‑137 (MQ=34) tAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCgg < 1:324491/137‑1 (MQ=34) gcgcgATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑TGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGa < 2:132810/149‑1 (MQ=37) gcgcgATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGa < 8:300271/149‑1 (MQ=37) cgcgATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAg < 1:47072/149‑1 (MQ=37) gcgATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAgg < 1:89709/149‑1 (MQ=37) gTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAAccc > 2:247284/1‑149 (MQ=37) ttCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAAcccc > 7:285970/1‑149 (MQ=37) aGGCGACGCATATTGCGACTTCAGGCGGCCGAGCGTTGGGCTTGCTAAGGGTGGTCACGGGCATGGATGCCCGTCAAGCGCTT‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCTTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGa < 4:312611/149‑1 (MQ=11) aGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCg > 3:164094/1‑147 (MQ=37) gCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGc > 1:9806/1‑149 (MQ=37) gCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAgc > 8:170248/1‑149 (MQ=37) gCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAgc > 8:277075/1‑149 (MQ=37) gCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAgc > 7:301388/1‑149 (MQ=37) gATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑CCATGGGGCCT‑CAgcg < 6:222167/98‑1 (MQ=11) gACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGa > 6:65038/1‑106 (MQ=32) gACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑CCATGGGGCCt < 2:203271/87‑1 (MQ=255) aCTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCg > 4:264290/1‑149 (MQ=37) cAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGATCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGga < 1:247284/147‑1 (MQ=37) gaggCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGgatga > 3:3521/1‑147 (MQ=37) gCCGAGCTTAGGGTTTGCTAAGGGTGGTTACGGGCATGTATGCCCTTAAAGGGTGG‑AGGGCCCTT‑GTTTGGGGCGTTCTGCGGTTACTCCCGTTTGCATGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGa < 8:301388/149‑1 (MQ=2) gAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAgcg > 3:293316/1‑149 (MQ=38) ggCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGttt > 3:3325/1‑149 (MQ=39) ggCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGttt > 6:331349/1‑149 (MQ=39) ttGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGtttttt > 3:13867/1‑149 (MQ=39) gCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTgg > 3:338905/1‑149 (MQ=39) aGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGGTGATAGGAGCGCAGCGTTTTTTGGTTAC‑tttt > 6:207822/1‑149 (MQ=255) aGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGa < 1:221270/125‑1 (MQ=35) aGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGa > 2:221270/1‑125 (MQ=35) cGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTcgc < 7:277075/149‑1 (MQ=39) cGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTcgc < 5:331349/149‑1 (MQ=39) ggCATCCATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTg < 4:91622/132‑1 (MQ=255) ggCATCCATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTg > 3:91622/1‑132 (MQ=255) gCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGgat > 2:289712/1‑109 (MQ=35) gCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGtt > 2:207298/1‑149 (MQ=39) cATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGttt > 1:315935/1‑149 (MQ=39) tGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGa < 7:170248/149‑1 (MQ=39) ggATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑ttt > 3:75773/1‑135 (MQ=40) ggATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑ttt < 4:75773/135‑1 (MQ=40) ccaTGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAggg < 2:232404/96‑1 (MQ=37) ccaTGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAggg > 1:232404/3‑98 (MQ=37) aTGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGttt > 6:150115/1‑144 (MQ=39) aTGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGttt < 5:150115/144‑1 (MQ=39) gCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACaaa > 6:21705/1‑148 (MQ=39) cccGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACaaaaa < 4:293316/149‑1 (MQ=39) cccGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACaaa > 2:332188/1‑147 (MQ=39) ccGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAg > 2:262434/1‑149 (MQ=39) ccGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAg > 2:113751/1‑149 (MQ=39) gcTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACccgcc > 8:258697/1‑149 (MQ=39) gcaGGCCCCAT‑CCATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACccgccg > 3:212286/3‑148 (MQ=255) tgcggcccATGGGAGGGGGCCTGCCGCGCGTACCCCCGGGACCAAGCCCGGAGCCAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGt < 5:16238/144‑1 (MQ=14) ggCCCCAT‑CCATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAg < 4:212286/149‑1 (MQ=255) gCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACaaaaa > 2:260972/1‑133 (MQ=40) gCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACaaaaa < 1:260972/133‑1 (MQ=40) gCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAgg > 4:66635/1‑149 (MQ=39) ccccAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAggg < 2:9806/149‑1 (MQ=39) cccAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGttt > 1:176548/1‑123 (MQ=40) cccAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGc > 6:301763/1‑149 (MQ=39) ccAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGc > 8:119060/1‑148 (MQ=39) ccAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGc > 6:140908/1‑148 (MQ=39) ccAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGc > 8:61765/1‑148 (MQ=39) gatggGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTACTTTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATcc > 6:320014/1‑149 (MQ=255) | CTGCGTCTGCGTCTGCTTCTGCTTTTGCTGTTGCTTCTAAGCGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGAAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑AGGCCCCAT‑GGATGGGGCCTGCAGCGCGTACTCCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGTTTTTTGGTTAC‑TTTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCC > NC_002947/2412758‑2413052 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |