| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,440,146 | T→G | 7.4% | L296R (CTC→CGC) | pcaF‑II → | beta‑ketoadipyl‑CoA thiolase subunit beta |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,440,146 | 0 | T | G | 7.4% | 378.4 / 14.8 | 120 | L296R (CTC→CGC) | pcaF‑II | beta‑ketoadipyl‑CoA thiolase subunit beta |
| Reads supporting (aligned to +/- strand): ref base T (57/54); new base G (5/4); total (62/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 | |||||||||||
Only 100 of 127 total aligned reads displayed.
GGCGCCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCTTTG > NC_002947/2440001‑2440294 | ggCGCCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCaa < 1:240983/149‑1 (MQ=255) gcCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑Cg > 4:143775/1‑149 (MQ=255) gATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGa > 3:109012/1‑149 (MQ=255) gTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCAt < 5:207777/149‑1 (MQ=255) aTGTCCGGTCAGCGAGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGc > 7:299596/1‑149 (MQ=255) cGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGata > 1:226217/1‑149 (MQ=255) cGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCGCACG‑‑CTTGAGGGCtttct > 6:200623/1‑135 (MQ=255) ggTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGatat < 5:250645/149‑1 (MQ=255) gTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGcc < 2:40609/143‑1 (MQ=255) gTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGcc > 1:40609/1‑143 (MQ=255) aGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGAc < 7:105776/149‑1 (MQ=255) aGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGAc > 4:62938/1‑149 (MQ=255) gTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACtt > 1:326173/1‑148 (MQ=255) gcttGGACCTCTGTATCCAGCGATTGGGGGTGATGCGTTCGATGGCAGTGGCAGGTGTCGACCCTGCAATCATGGGGTACGGCCGGGTGCCATCGAGCCATAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATc < 2:305466/146‑1 (MQ=255) cATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATc > 4:149021/1‑148 (MQ=255) cATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGACGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATc > 2:116145/1‑148 (MQ=255) ccTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTc > 6:197787/1‑148 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGAc > 8:189515/1‑135 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGAc < 7:189515/135‑1 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGa < 1:320873/143‑1 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGa > 2:320873/1‑143 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCaa < 8:184704/149‑1 (MQ=255) tCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCGCACG‑‑CTTGAGGGCtttctg < 8:33310/119‑5 (MQ=255) tCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCGCACG‑‑CTTGAGGGCtttctg > 7:33310/1‑115 (MQ=255) ggTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAAc < 1:110767/147‑1 (MQ=255) ggTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACg < 8:299596/148‑1 (MQ=255) gTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGaa < 7:162417/149‑1 (MQ=255) aTCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAg > 3:201163/1‑148 (MQ=255) cAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCAt < 5:208626/131‑1 (MQ=255) aGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTc > 2:269217/1‑149 (MQ=255) aTTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCg < 3:283472/97‑1 (MQ=255) aTTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCg > 4:283472/1‑97 (MQ=255) aTTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTg > 8:216328/1‑149 (MQ=255) ttGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTgc > 6:336405/1‑149 (MQ=255) tGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGAc > 5:241728/1‑113 (MQ=255) tGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGAc < 6:241728/113‑1 (MQ=255) aTCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGccc < 4:201163/148‑1 (MQ=255) aTCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCt > 7:181852/1‑149 (MQ=255) ccGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGcc < 2:159419/145‑1 (MQ=255) ccGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGcc > 1:159419/1‑145 (MQ=255) gTTCGATGGCAGTGGCCGGTGTCGGCCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATAGACTTGATCGAGCTCAACGAAGCCGTCGCTGCGCAGGCCCTGccc > 6:146716/1‑149 (MQ=255) gATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGc > 5:184032/1‑149 (MQ=255) gATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGc < 5:58402/149‑1 (MQ=255) gATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGc < 1:269217/149‑1 (MQ=255) aTGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCt < 5:146716/149‑1 (MQ=255) ggCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTg < 8:286331/148‑1 (MQ=255) cAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGaaa < 3:143775/149‑1 (MQ=255) gTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCt > 6:92694/1‑143 (MQ=255) gTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCt < 5:92694/143‑1 (MQ=255) gTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGa > 7:192973/1‑149 (MQ=255) tGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGAc < 2:226217/149‑1 (MQ=255) gCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACtt > 2:53690/1‑149 (MQ=255) gCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACtt < 5:336405/149‑1 (MQ=255) gCCGATGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCt > 5:174555/1‑140 (MQ=255) cGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGaaa < 8:285730/142‑1 (MQ=255) cGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGaaa > 7:285730/1‑142 (MQ=255) gtgtCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGaaa < 3:149021/149‑1 (MQ=255) gACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCt < 4:109012/149‑1 (MQ=255) aCCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTc > 6:172318/1‑149 (MQ=255) cccGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGaa > 1:8721/1‑141 (MQ=255) ccGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGAc > 1:267800/1‑135 (MQ=255) ccGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGa > 7:53106/1‑149 (MQ=255) tCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatg < 2:326173/149‑1 (MQ=255) aTGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgga < 5:197787/149‑1 (MQ=255) aTGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgg < 3:62938/148‑1 (MQ=255) tGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 3:10341/149‑1 (MQ=255) tGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat > 2:15462/1‑149 (MQ=255) tGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 8:181852/149‑1 (MQ=255) ggCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAGTCCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 1:116145/149‑1 (MQ=255) cTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGa > 7:261380/1‑135 (MQ=255) cTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGa < 8:261380/135‑1 (MQ=255) cTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATgaga < 3:188455/149‑1 (MQ=255) cGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAgg < 7:292419/149‑1 (MQ=255) ggCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGt < 1:15462/149‑1 (MQ=255) gCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGt > 1:178336/1‑148 (MQ=255) cGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAAc > 4:265056/1‑149 (MQ=255) aTCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCAcg > 1:214742/1‑149 (MQ=255) aTCGACCAAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat > 7:201849/1‑130 (MQ=255) aTCGACCAAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 8:201849/130‑1 (MQ=255) gACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCAcggcg < 8:192973/149‑1 (MQ=255) gACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCAcggcg > 7:216339/1‑149 (MQ=255) cccAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACggcggc < 8:289650/149‑1 (MQ=255) ccAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGgcggcg > 6:101838/1‑149 (MQ=255) tcaaGCCCGCACG‑‑CTTGAGGGCTTGACCATGGCCGATATCGACTTGATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTa > 1:246567/3‑131 (MQ=255) tcaaGCCCGCACG‑‑CTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTa < 2:246567/129‑1 (MQ=255) aaGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCAtt < 2:245831/149‑1 (MQ=255) aaGCCCGCACG‑‑CTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCAtt > 2:244394/1‑149 (MQ=255) gCCCGCACG‑‑CTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatg < 7:244519/114‑1 (MQ=255) ccTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGt < 3:203714/99‑1 (MQ=255) ccTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGt > 4:203714/1‑99 (MQ=255) ccTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGgcgc > 4:324272/1‑141 (MQ=255) ccTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGgcgc < 3:324272/141‑1 (MQ=255) cTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCttt > 8:163711/1‑149 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat > 4:180573/1‑113 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 3:180573/113‑1 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgga < 2:29783/112‑1 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgga > 1:29783/1‑112 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgg > 4:189328/1‑111 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCTTTg > 5:326748/1‑149 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCAGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACTGCGGCGCCATTGCTTTg > 8:81927/1‑149 (MQ=255) | GGCGCCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCTTTG > NC_002947/2440001‑2440294 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |