| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,440,152 | G→T | 7.0% | R298L (CGT→CTT) | pcaF‑II → | beta‑ketoadipyl‑CoA thiolase subunit beta |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,440,152 | 0 | G | T | 7.0% | 410.0 / 15.7 | 128 | R298L (CGT→CTT) | pcaF‑II | beta‑ketoadipyl‑CoA thiolase subunit beta |
| Reads supporting (aligned to +/- strand): ref base G (61/58); new base T (5/4); total (66/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.64e-01 | |||||||||||
Only 100 of 129 total aligned reads displayed.
GCCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCTTTGGG > NC_002947/2440004‑2440296 | gATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGa > 8:105776/1‑149 (MQ=255) gATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGa > 3:109012/1‑149 (MQ=255) gTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCAt < 5:207777/149‑1 (MQ=255) aTGTCCGGTCAGCGAGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGc > 7:299596/1‑149 (MQ=255) cGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGata > 1:226217/1‑149 (MQ=255) cGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCGCACG‑‑CTTGAGGGCtttct > 6:200623/1‑135 (MQ=255) gTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGcc > 1:40609/1‑143 (MQ=255) aGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGAc > 4:62938/1‑149 (MQ=255) gTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACtt > 1:326173/1‑148 (MQ=255) ccATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATc < 5:266099/149‑1 (MQ=255) cATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATc > 4:149021/1‑148 (MQ=255) cATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGACGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATc > 2:116145/1‑148 (MQ=255) ccTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTc > 6:197787/1‑148 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGa > 2:320873/1‑143 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGa < 1:320873/143‑1 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCaa < 8:184704/149‑1 (MQ=255) tCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCGCACG‑‑CTTGAGGGCtttctg > 7:33310/1‑115 (MQ=255) tCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCGCACG‑‑CTTGAGGGCtttctg < 8:33310/119‑5 (MQ=255) ggTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAAc < 1:110767/147‑1 (MQ=255) ggTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACg > 6:58402/1‑148 (MQ=255) ggTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACg < 8:299596/148‑1 (MQ=255) gTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGaa < 7:162417/149‑1 (MQ=255) aTCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAg > 3:201163/1‑148 (MQ=255) cAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCAt < 5:208626/131‑1 (MQ=255) aGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGcc < 4:276778/146‑1 (MQ=255) aGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGcc > 3:276778/1‑146 (MQ=255) aGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTc > 2:269217/1‑149 (MQ=255) aTTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTg > 8:216328/1‑149 (MQ=255) ttGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTgc > 6:336405/1‑149 (MQ=255) gTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGc < 7:216328/149‑1 (MQ=255) tGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGAc > 5:241728/1‑113 (MQ=255) aTCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGccc < 4:201163/148‑1 (MQ=255) aTCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCt > 7:181852/1‑149 (MQ=255) ccGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGcc > 1:159419/1‑145 (MQ=255) ccGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGcc > 7:188706/1‑145 (MQ=255) ccGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGcc < 2:159419/145‑1 (MQ=255) ccGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGcc < 8:188706/145‑1 (MQ=255) gTTCGATGGCAGTGGCCGGTGTCGGCCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATAGACTTGATCGAGCTCAACGAAGCCGTCGCTGCGCAGGCCCTGccc > 6:146716/1‑149 (MQ=255) gATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGc > 5:184032/1‑149 (MQ=255) gATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGc < 5:58402/149‑1 (MQ=255) gATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGc < 1:269217/149‑1 (MQ=255) aTGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCt < 5:146716/149‑1 (MQ=255) tGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCt > 4:188455/1‑148 (MQ=255) ggCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTg < 8:286331/148‑1 (MQ=255) aGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGa > 2:314439/1‑146 (MQ=255) gTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCt > 6:92694/1‑143 (MQ=255) gTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCt < 5:92694/143‑1 (MQ=255) gTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGa > 7:192973/1‑149 (MQ=255) tGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGAc < 2:226217/149‑1 (MQ=255) gCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACtt < 5:336405/149‑1 (MQ=255) gCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACtt > 2:53690/1‑149 (MQ=255) gCCGCTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCt < 6:174555/140‑1 (MQ=255) gCCGATGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCt > 5:174555/1‑140 (MQ=255) cGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGaaa < 8:285730/142‑1 (MQ=255) cGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGaaa > 7:285730/1‑142 (MQ=255) gtgtCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGaaa < 3:149021/149‑1 (MQ=255) gACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCt < 4:109012/149‑1 (MQ=255) cccGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGaa < 2:8721/141‑1 (MQ=255) cccGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGaa > 1:8721/1‑141 (MQ=255) ccGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGAc > 1:267800/1‑135 (MQ=255) ccGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGAc < 2:267800/135‑1 (MQ=255) ccGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGa > 7:53106/1‑149 (MQ=255) cGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGa > 3:172607/1‑148 (MQ=255) ggCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGAc > 4:10341/1‑148 (MQ=255) tCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatg < 2:326173/149‑1 (MQ=255) aTGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgga < 5:197787/149‑1 (MQ=255) aTGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgg < 3:62938/148‑1 (MQ=255) tGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 8:181852/149‑1 (MQ=255) tGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat > 2:15462/1‑149 (MQ=255) tGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 3:10341/149‑1 (MQ=255) ggCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAGTCCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 1:116145/149‑1 (MQ=255) cTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGa > 7:261380/1‑135 (MQ=255) ggCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGt < 1:15462/149‑1 (MQ=255) gCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGt > 1:178336/1‑148 (MQ=255) cGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAAc > 4:265056/1‑149 (MQ=255) aTCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCAcg > 1:214742/1‑149 (MQ=255) aTCGACCAAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 8:201849/130‑1 (MQ=255) aTCGACCAAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat > 7:201849/1‑130 (MQ=255) gACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCAcggcg < 8:192973/149‑1 (MQ=255) gACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCAcggcg > 7:216339/1‑149 (MQ=255) cccAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACggcggc < 8:289650/149‑1 (MQ=255) cccAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACggcggc > 7:289650/1‑149 (MQ=255) ccAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGgcggcg > 6:101838/1‑149 (MQ=255) ccAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGgcggcg > 4:89433/1‑149 (MQ=255) tcaaGCCCGCACG‑‑CTTGAGGGCTTGACCATGGCCGATATCGACTTGATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTa > 1:246567/3‑131 (MQ=255) tcaaGCCCGCACG‑‑CTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTa < 2:246567/129‑1 (MQ=255) aaGCCCGCACG‑‑CTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCAtt > 2:244394/1‑149 (MQ=255) gCCCGCACG‑‑CTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatg > 8:244519/1‑114 (MQ=255) ccTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGt < 3:203714/99‑1 (MQ=255) ccTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGt > 4:203714/1‑99 (MQ=255) ccTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGgcgc < 3:324272/141‑1 (MQ=255) ccTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGgcgc > 4:324272/1‑141 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 3:180573/113‑1 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat > 4:180573/1‑113 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgga > 1:29783/1‑112 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgga < 2:29783/112‑1 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCTTTg > 5:326748/1‑149 (MQ=255) tCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCAGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACTGCGGCGCCATTGCTTTg > 8:81927/1‑149 (MQ=255) aaG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCTTTggg < 2:178336/149‑1 (MQ=255) aaG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCTTTggg < 6:78185/149‑1 (MQ=255) | GCCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCCCTCAAG‑‑CGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCTTTGGG > NC_002947/2440004‑2440296 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |