| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,477,009 | G→C | 5.1% | V182L (GTC→CTC) | PP_2170 → | chorismate mutase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,477,009 | 0 | G | C | 5.1% | 566.4 / 11.8 | 171 | V182L (GTC→CTC) | PP_2170 | chorismate mutase family protein |
| Reads supporting (aligned to +/- strand): ref base G (74/88); new base C (5/4); total (79/92) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 174 total aligned reads displayed.
TGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCATGCGAAGCTGGCCGATGAGGCTTCA > NC_002947/2476861‑2477155 | tACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTc < 3:96716/149‑1 (MQ=255) ccTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGa < 4:271707/149‑1 (MQ=255) cTTGCACCTCTCTGGACGAATTCCGTCATCGGATCGATGAACTCGACCGCAGCCTCGTTTCGCTTCTCGCCAACCGTGGAAGGCTCGTGACGCATGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCGTG‑‑CTCGGGTCGa < 6:134374/148‑1 (MQ=255) ttGCACCTCTCTGGACGAAGTCCGTCAACGGATCCATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAg > 8:70939/1‑148 (MQ=255) gCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGt < 2:184098/142‑1 (MQ=255) gCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGt > 1:184098/1‑142 (MQ=255) cACCTCTCTGGACGAAGTCCGTCAACGGATCTATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCaa < 4:11001/148‑1 (MQ=255) cACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGACCCGAGCagg < 2:2596/149‑3 (MQ=255) aCCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCTTG‑‑CTCGACCCGAGCaggc > 5:54862/1‑146 (MQ=255) aCCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGa < 3:182201/143‑1 (MQ=255) ctctctGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGa < 1:290894/149‑1 (MQ=255) ctctctGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGa > 7:283121/1‑149 (MQ=255) tctctGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑t > 7:77414/1‑149 (MQ=255) ctctGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑t > 5:315565/1‑148 (MQ=255) tctGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑Tc > 6:51111/1‑148 (MQ=255) tGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGACCCGAGCaggcgca < 2:304280/145‑7 (MQ=255) gACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCaag > 6:147398/1‑147 (MQ=255) aCGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTc > 8:127647/1‑131 (MQ=255) aCGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTc < 7:127647/131‑1 (MQ=255) gAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGc > 6:6046/1‑149 (MQ=255) gTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCg > 6:171277/1‑149 (MQ=255) tCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCaaga < 8:20742/141‑1 (MQ=255) tCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTA‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGt < 1:41542/149‑1 (MQ=255) ccGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGt > 4:314692/1‑148 (MQ=255) cGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCACCCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGt < 1:87151/148‑1 (MQ=255) cGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGACCCGAGCaggc < 2:224316/131‑4 (MQ=255) gTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGT‑GAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑t < 1:135692/132‑1 (MQ=255) cAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACGA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTc < 1:29307/120‑1 (MQ=255) cAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTc > 2:29307/1‑120 (MQ=255) aaCGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGAt < 7:334815/148‑1 (MQ=255) aaCCGATCGAGGAAATCGACCGCAGCCTCGCTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATg < 8:297244/149‑1 (MQ=255) aCGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATgg > 5:236691/1‑149 (MQ=255) ggATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCt < 4:38454/149‑1 (MQ=255) aTCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGt > 3:266137/1‑138 (MQ=255) aTCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGa < 3:314692/149‑1 (MQ=255) aTGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGa < 4:165786/112‑1 (MQ=255) aTGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGa > 5:150009/1‑120 (MQ=255) tGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCaa > 1:20047/1‑123 (MQ=255) tGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCaa < 2:20047/123‑1 (MQ=255) tCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAg > 2:220682/1‑149 (MQ=255) gTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAgg < 5:147398/148‑1 (MQ=255) tttCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAggtg < 1:220682/149‑1 (MQ=255) tttCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAggtg < 2:58538/149‑1 (MQ=255) tttCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAggtg > 6:97637/1‑149 (MQ=255) gCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGtggtgg < 6:251645/149‑1 (MQ=255) cTTCTCGCCAAACGTGGAAGGCTCGTGACGAAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGtggtgg > 1:30649/1‑148 (MQ=255) tcGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGAc > 8:59882/1‑116 (MQ=255) tcGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGAc < 7:59882/116‑1 (MQ=255) tcGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAg > 3:313092/1‑149 (MQ=255) ggcataCGTGGAAGGGTCGTGACGCAAGCAGCGGGCTTGTAGTATACCA‑GCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTGGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGt < 7:97101/144‑1 (MQ=255) gCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCT‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTTA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGt < 6:40043/149‑1 (MQ=255) gCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGt > 4:235193/1‑77 (MQ=255) gCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGt < 3:235193/77‑1 (MQ=255) gCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAggt > 5:36748/1‑137 (MQ=255) gCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGgtggtg > 6:127268/1‑141 (MQ=255) gCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGt < 5:255328/149‑1 (MQ=255) ccAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTGCTCTCGAGTACAGCAAAGGAGAAAAGAATGCTACTGAGATTGCTGACGAAACCCGTTCCTACGCAGAAGTTGTGGataa > 1:282300/1‑145 (MQ=255) ccAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTc > 5:128388/1‑149 (MQ=255) cAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTc > 1:167183/1‑148 (MQ=255) cAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCt < 2:289185/149‑1 (MQ=255) aaaCGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTa > 5:98723/1‑149 (MQ=255) aCGTGGCCGGCTCGTGAGGCATGCAGCTGGCTTCAAGAAAACCA‑CCGAGGATGTGCGTGCGCCTG‑‑CTCGGGGCGAGCAAGTGA‑TCCAGAAGGCTCGTGTGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATc < 8:299217/149‑1 (MQ=255) aCGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAgg > 8:315306/1‑131 (MQ=255) gAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGc < 2:309009/148‑1 (MQ=255) aaGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGAc < 8:226068/103‑1 (MQ=255) aGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCgat < 4:184807/149‑1 (MQ=255) tCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGAtt > 1:94977/1‑149 (MQ=255) tCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGAtt > 7:48673/1‑149 (MQ=255) tCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGAtt > 5:110279/1‑149 (MQ=255) gTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGAttt < 7:228559/148‑1 (MQ=255) gCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCt > 5:283226/1‑149 (MQ=255) cagcGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATc < 8:48673/149‑1 (MQ=255) cGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGcc > 7:315246/1‑149 (MQ=255) gCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCgag < 6:236691/149‑1 (MQ=255) ttCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAAc < 8:284644/109‑1 (MQ=255) ttCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCgag > 4:222090/1‑147 (MQ=255) tCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCgaggag > 3:105392/1‑149 (MQ=255) aaGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCt < 5:1062/149‑1 (MQ=255) aaGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCGCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCt < 5:6046/149‑1 (MQ=255) aGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCt > 8:118160/1‑148 (MQ=255) aGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCCATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCt > 3:49890/1‑148 (MQ=255) aGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCCATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTc < 4:49890/149‑1 (MQ=255) gAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCg < 5:140110/127‑1 (MQ=255) gAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCg > 6:140110/1‑127 (MQ=255) gAAAACAA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGCTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGAAGAAACCGGTGCATCGGCTGAGCTGGTGGAACAGGTCTAACGGGAGATGATTTCGCACTTCATCGCCGAGGAGCTc > 7:320282/1‑148 (MQ=255) acca‑ccGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAacac < 7:118160/149‑1 (MQ=255) acca‑ccGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAacac < 3:197281/149‑1 (MQ=255) ca‑ccGATGATGTGAGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACAcc > 8:43494/1‑148 (MQ=255) a‑ccGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTc < 3:104712/126‑1 (MQ=255) ccGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCAt < 4:313092/149‑1 (MQ=255) cGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCgg < 3:21464/80‑1 (MQ=255) cGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCgg > 4:21464/1‑80 (MQ=255) tgcgtgcgCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCATGCGAAGCTg < 6:283226/149‑1 (MQ=255) cgcCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCATGCGAAGCTGGCCGAt > 6:328655/1‑149 (MQ=255) gcCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCATGCGAAGCTGGCCGATg < 4:105392/149‑1 (MQ=255) ccTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCATGCGAAGCTGGCCGATGa < 7:287491/149‑1 (MQ=255) ccTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCATGCGAAGCTGGCCGATGa < 7:115939/149‑1 (MQ=255) tCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCATGCGAAGCTGGCCGATGAGGCtt > 8:246458/1‑149 (MQ=255) tCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCATGCGAAGCTGGCCGATGAGGCt > 8:305403/1‑148 (MQ=255) gggTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCATGCGAAGCTGGCCGATGAGGCtt > 1:205798/1‑147 (MQ=255) | TGTACCTTGCACCTCTCTGGACGAAGTCCGTCAACGGATCGATGAAATCGACCGCAGCCTCGTTTCGCTTCTCGCCAAACGTGGAAGGCTCGTGACGCAAGCAGCGGGCTTCAAGAAAACCA‑CCGATGATGTGCGTGCGCCTG‑‑CTCGGGTCGAGCAAGTGA‑TCAAGAAGGCTCGTGAGATGGCTGACGAAACCGGTGCCTCGGCTGAGGTGGTGGAACAGGTCTATCGGGCGATGATTTCGGCCTTCATCGCCGAGGAGCTCAACACCCATGCGAAGCTGGCCGATGAGGCTTCA > NC_002947/2476861‑2477155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |