| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,522,977 | C→A | 5.2% | R1410S (CGT→AGT) ‡ | PP_2212 → | leucine‑rich repeat‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,522,977 | 0 | C | A | 5.2% | 379.6 / 7.1 | 116 | R1410S (CGT→AGT) ‡ | PP_2212 | leucine‑rich repeat‑containing protein |
| Reads supporting (aligned to +/- strand): ref base C (55/55); new base A (3/3); total (58/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.34e-01 | |||||||||||
Only 100 of 118 total aligned reads displayed.
GCCCAACCAGCCGTATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAG > NC_002947/2522835‑2523120 | gCCCAACCAGCCGTATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTAc < 5:203535/148‑1 (MQ=255) cccAACCAGCCGTATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCt > 8:232080/1‑149 (MQ=255) ccAACCAGCCGTATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTATAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTTACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTg > 6:101000/1‑149 (MQ=255) ccAACCAGCCGTATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTg > 7:157098/1‑149 (MQ=255) cAACCAGCCGTATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTgc > 2:288298/1‑149 (MQ=255) aCCAGCCGTATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTgcgc < 8:179722/149‑1 (MQ=255) gCCGTATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCAGGTAACGgcgc > 7:75527/1‑145 (MQ=255) cGTATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCaa < 3:318175/149‑1 (MQ=255) tATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACa > 8:299875/1‑149 (MQ=255) aTGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGcc < 7:226873/129‑1 (MQ=255) aTGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGcc > 8:226873/1‑129 (MQ=255) tGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTa < 7:152518/132‑1 (MQ=255) tGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTa > 8:152518/1‑132 (MQ=255) ccATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCAGGTAACGGCGCCAga < 6:292896/141‑2 (MQ=255) ccATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCAGGTAACGGCGCCAga > 5:292896/1‑140 (MQ=255) cATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGAcc < 7:232080/149‑1 (MQ=255) cgcTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAAt < 5:26479/149‑1 (MQ=255) cgatATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCaaa < 5:87209/145‑1 (MQ=255) tATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGtt > 3:195369/1‑149 (MQ=255) tCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGtt < 1:125600/147‑1 (MQ=255) cccGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTg < 6:282546/123‑1 (MQ=255) ccGATGCTGTCGCGCTGACACAGGGCCAGGTTGAGGATGCTTTTCTGCGGGTTACGCGCGCGCAGAGCATCGAGGGCCTGACCGATAGCCTGAGCGAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGAt < 5:267757/149‑1 (MQ=255) ccGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGAt > 1:240795/1‑149 (MQ=255) ccGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGAt < 5:169020/149‑1 (MQ=255) cGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCACGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATg > 7:114543/1‑149 (MQ=255) gATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCACGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGc < 8:114543/149‑1 (MQ=255) aTGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGcc > 1:150345/1‑149 (MQ=255) cgcTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTg < 3:124911/147‑1 (MQ=255) cgcTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTg > 4:124911/1‑147 (MQ=255) gcTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTgc < 3:158693/110‑1 (MQ=255) gcTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTgc > 4:158693/1‑110 (MQ=255) tGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGAt > 7:90148/1‑149 (MQ=255) acacAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACAt < 8:15500/117‑1 (MQ=255) cacaGGCCCAGGTAGACGATGCATTTCTGCGGGCTACGCGCGCGCAGACCATCGATGGCCTGACCGATAGACTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTac < 7:148451/149‑1 (MQ=255) gCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCg > 3:95261/1‑149 (MQ=255) ccAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGgc > 6:22427/1‑149 (MQ=255) gagGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGc < 5:147493/148‑1 (MQ=255) gATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCaa < 7:132072/105‑1 (MQ=255) gATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCaa > 8:132072/1‑105 (MQ=255) gATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCtt > 8:294424/1‑147 (MQ=255) gATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGa < 3:63295/149‑1 (MQ=255) aTGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAg < 2:150345/149‑1 (MQ=255) aTGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAg < 2:36124/149‑1 (MQ=255) cATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTg > 6:181443/1‑149 (MQ=255) aTTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGt < 5:300835/118‑1 (MQ=255) aTTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGt > 6:300835/1‑118 (MQ=255) tCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAg < 4:195369/148‑1 (MQ=255) ggTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCTGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAAc < 8:137699/149‑1 (MQ=255) gTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCAc < 2:48478/128‑1 (MQ=255) gTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCAc > 1:48478/1‑128 (MQ=255) gcgcgcgcAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTg > 5:93741/1‑149 (MQ=255) cgcgcAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCt < 7:294424/149‑1 (MQ=255) cgcAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTg < 6:93741/149‑1 (MQ=255) gACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGgcgc > 6:344753/1‑149 (MQ=255) gACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGgcgc > 7:180525/1‑149 (MQ=255) cATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGc < 4:53266/122‑1 (MQ=255) cATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGc > 3:53266/1‑122 (MQ=255) cATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTg > 5:173265/1‑142 (MQ=255) aTCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCcggc < 1:288298/149‑1 (MQ=255) tCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGCTGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCcggcg > 6:215051/1‑149 (MQ=255) gAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCggcggc > 6:82516/1‑149 (MQ=255) gAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCCGCGCACGCATGAGCTGCATGCTCAACGTCCTGTCTTGGCGCCggcggc > 8:331534/1‑149 (MQ=255) aGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCggcggc > 4:242993/1‑148 (MQ=255) aGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCggcggc < 3:242993/148‑1 (MQ=255) aGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGcc > 7:251138/1‑149 (MQ=255) gCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAAc < 7:279068/123‑1 (MQ=255) gCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTc > 3:152050/1‑149 (MQ=255) ccTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCt < 8:249160/127‑1 (MQ=255) ccTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCt > 7:249160/1‑127 (MQ=255) ctgaaggATAGCCTGATCCATCGCGCGTTGTTGCGGCGGTACCTGCGCCAGCAAAATGACCAAATGTTCGATTCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGa < 8:180525/143‑1 (MQ=255) cTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTc > 6:302081/1‑147 (MQ=255) tGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTg < 5:74215/126‑1 (MQ=255) aCCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagca < 7:331534/149‑1 (MQ=255) cGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagcag > 7:43924/1‑148 (MQ=255) aTAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCt < 8:318624/119‑1 (MQ=255) aTAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCt > 7:318624/1‑119 (MQ=255) aTAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTg > 4:203031/1‑125 (MQ=255) aTAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTg < 3:203031/125‑1 (MQ=255) ccTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCACAGTGCGGATTTCACTCGGCGCACGCTTGAGCTGCAGGCTCACCGTCCTGGCTTGGCGCCGGCGGCCGTCGAGCAGCAACtcc > 7:57995/1‑147 (MQ=255) tGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGc > 6:177800/1‑149 (MQ=255) tGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGc > 3:18637/1‑149 (MQ=255) tGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGc > 5:303592/1‑149 (MQ=255) gAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGcc > 4:60490/1‑149 (MQ=255) aGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGcc < 5:302081/148‑1 (MQ=255) ccAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGc < 6:132073/149‑1 (MQ=255) aGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTa > 4:240020/1‑149 (MQ=255) gcgcgcGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTa > 5:257338/1‑148 (MQ=255) cgcgcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACa < 8:43924/149‑1 (MQ=255) gcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACa < 7:109072/146‑1 (MQ=255) cgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGaa < 3:240020/149‑1 (MQ=255) tCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcag > 7:261742/1‑149 (MQ=255) tGGCGCAGGTAACGGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAgg < 6:225580/142‑1 (MQ=255) tGGCGCAGGTAACGGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAgg > 5:225580/1‑142 (MQ=255) gcgcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTc > 5:295857/1‑115 (MQ=255) gcgcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTc < 6:295857/115‑1 (MQ=255) gcgcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagcag < 5:295289/121‑1 (MQ=255) gcgcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagcag > 6:295289/1‑121 (MQ=255) gcgcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagcag > 4:28541/1‑148 (MQ=255) gcgcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagca < 5:177800/147‑1 (MQ=255) gcgcCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagc < 8:261742/146‑1 (MQ=255) | GCCCAACCAGCCGTATGCCATGCGCTATCCCGATGCTGTCGCGCTGACACAGGCCCAGGTAGAGGATGCATTTCTGCGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAG > NC_002947/2522835‑2523120 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |