Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 277,242 | A→T | 8.9% | intergenic (‑75/+22) | PP_0223 ← / ← PP_0224 | DszC family monooxygenase/DszC family monooxygenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 277,242 | 0 | A | T | 8.9% | 159.6 / 5.9 | 56 | intergenic (‑75/+22) | PP_0223/PP_0224 | DszC family monooxygenase/DszC family monooxygenase |
Reads supporting (aligned to +/- strand): ref base A (25/26); new base T (3/2); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.03e-01 |
CGCTGGTGATGATATTTGTAGTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGCCAGTGGCGGTCGAGGT > NC_002947/277104‑277388 | cGCTGGTGATGATATTTGTAGTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCa < 1:253317/149‑1 (MQ=255) tgatgaTATTTGTAGTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGccc > 3:215089/1‑149 (MQ=255) tgatATTTGTAGTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCa < 4:20442/149‑1 (MQ=255) gTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATc > 6:360274/1‑147 (MQ=255) tCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGAAACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAg < 6:311315/149‑1 (MQ=255) aTGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAgg > 5:359428/1‑148 (MQ=255) aTGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAgg > 8:173411/1‑148 (MQ=255) aTGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAACGCCGCTCCCACAGCAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATAAGATCCAgg > 1:169668/1‑148 (MQ=255) tgttgtTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGa > 4:74369/1‑148 (MQ=255) tgttgtTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACAAAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGaa > 1:79218/1‑149 (MQ=255) gttgttCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATc > 6:32869/1‑142 (MQ=255) gttgttCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATc < 5:32869/142‑1 (MQ=255) tctcCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAagca > 8:262355/1‑112 (MQ=255) tctcCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAagca < 7:262355/112‑1 (MQ=255) gggCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCgcagg > 1:258897/1‑148 (MQ=255) ccATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGcaggcagg < 3:74369/149‑1 (MQ=255) aTTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGt > 6:120856/1‑149 (MQ=255) aTTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCCATCCCACAGGAAACTGCGCTCTAGATGAGCGATCCTCCTTGTGGCGCCAAGGCCAGCAAAGCAGCCCCCAGGGCCCGCAAATCCGATACAGGAAAGCAGCCcaggcagg > 4:28558/1‑147 (MQ=255) gggCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGcc < 5:120856/148‑1 (MQ=255) gCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGc < 5:249965/129‑1 (MQ=255) gCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGc > 6:249965/1‑129 (MQ=255) cGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTaa < 3:163781/149‑1 (MQ=255) tttGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAAt > 3:38904/1‑122 (MQ=255) tttGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAAt < 4:38904/122‑1 (MQ=255) tGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAggtg < 6:359428/148‑1 (MQ=255) tGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAggtg < 7:173411/148‑1 (MQ=255) gCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAg > 4:248385/1‑149 (MQ=255) cacaAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACcgcg < 3:248385/149‑1 (MQ=255) ggCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGcc > 4:169671/1‑103 (MQ=255) ggCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGcc < 3:169671/103‑1 (MQ=255) ccGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACt > 8:173049/1‑149 (MQ=255) cGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACtt < 4:215089/149‑1 (MQ=255) cccACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTgg < 1:171377/140‑1 (MQ=255) cccACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTgg > 2:171377/1‑140 (MQ=255) acaGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCTTTGCAGccca < 4:13793/63‑2 (MQ=18) acaGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCTTTGCAGccca > 3:13793/1‑62 (MQ=18) caGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCa > 7:177793/1‑149 (MQ=255) aGGAAACTGCGCTCTACTTGTGAGAGCGACATTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCAc > 7:52446/1‑149 (MQ=255) cTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCGCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGgt < 8:126287/148‑1 (MQ=255) cTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAggg < 2:79218/147‑1 (MQ=255) gtgAGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGgtgt < 8:52446/147‑1 (MQ=255) gCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCgg < 8:177793/149‑1 (MQ=255) cTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCAtt > 2:213985/1‑149 (MQ=255) ttGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTa > 4:291932/1‑106 (MQ=255) ttGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTa < 3:291932/106‑1 (MQ=255) tgtCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGc < 2:53446/149‑1 (MQ=255) tgtCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGc < 5:360274/149‑1 (MQ=255) tCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGcc < 2:14906/148‑1 (MQ=255) cgATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGCCAGTg < 2:258897/149‑1 (MQ=255) tgggggCTGCTTTGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGCCAGTgg > 6:223520/4‑149 (MQ=255) gATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGCCAGTgg > 4:228756/1‑149 (MQ=255) aTGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCAcc > 6:9291/1‑130 (MQ=255) aTGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCAcc < 5:9291/130‑1 (MQ=255) gggCTGCTTTGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTc > 6:331404/1‑138 (MQ=255) gggCTGCTTTGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTc < 5:331404/138‑1 (MQ=255) tGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGCCAGTGGCGGTc > 3:334106/1‑147 (MQ=255) tGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGCCAGTGGCGGTc > 6:271649/1‑147 (MQ=255) cAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGCCAGTGGCGGTCGa < 5:271649/147‑1 (MQ=255) aaaGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGCCAGTGGCGGTCGAGGt > 5:241167/1‑149 (MQ=255) aaGCAG‑CCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTc < 2:260597/129‑1 (MQ=255) aaGCAG‑CCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTc > 1:260597/1‑129 (MQ=255) | CGCTGGTGATGATATTTGTAGTCATGTTGTTCTCCGGGGCCATTGGGGCCGCTTTGCGGCACATCGCGACACAAGGCCGCTCCCACAGGAAACTGCGCTCTACTTGTGGGAGCGACCTTGTGTCGCGATGGGCTGCAAAGCAGCCCCCAGGGCCCGCAAATCAGATCCAGGAATGCCGCGCAGGCAGGGTGCCGTTAAGGTGGTAAGCGCCCACCGCGTGGTACTTCCAGCGCACCGGGTCGTGCAGGGTGTGCACCCGGGCATTTCGCCAGTGGCGGTCGAGGT > NC_002947/277104‑277388 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |