Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,680,412 | T→G | 11.1% | *385G (TGA→GGA) S281S (TCA→TCC) |
PP_2349 → PP_2350 ← |
CBS domain‑containing protein LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,680,412 | 0 | T | G | 11.1% | 129.0 / 6.6 | 45 | *385G (TGA→GGA) S281S (TCA→TCC) | PP_2349 PP_2350 | CBS domain‑containing protein LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base T (21/19); new base G (3/2); total (24/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
CTTGTTGTGCGAACAAGGCCTGCACTGCTTGCCGGTGCTTGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGC > NC_002947/2680264‑2680557 | cTTGTTGTGCGAACAAGGCCTGCACTGCTTGCCGGTGCTTGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTtgt > 1:200474/1‑149 (MQ=255) gttgtGCGAACAAGGCCTGCACTGCTTGCCGGTGCTTGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTtgtg < 3:103999/147‑1 (MQ=255) gAACAAGGCCTGCACTGCTTGCCGGTGCTTGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGc > 2:324341/1‑149 (MQ=255) aCAAGGCCTGCACTGCTTGCCGGTGCTTGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTg < 3:145467/149‑1 (MQ=255) gCCTGCACTGCTTGCCGGTGCTTGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGcc > 2:6138/1‑149 (MQ=255) cTTGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCa < 2:200474/149‑1 (MQ=255) ttGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCTGGATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTAGCTGGCGCCGGCAGCTACCAGCCGgcg > 1:67807/1‑147 (MQ=255) ttGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCgg > 4:10964/1‑130 (MQ=255) ttGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCgg < 3:10964/130‑1 (MQ=255) ttGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAg > 3:124577/1‑149 (MQ=255) gATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAg < 1:324341/147‑1 (MQ=255) gACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGc > 3:303185/1‑113 (MQ=255) gACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGc < 4:303185/113‑1 (MQ=255) cAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAg < 7:247455/149‑1 (MQ=255) gggTCATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTGGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAg < 2:67807/149‑1 (MQ=255) cccAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCt > 8:310134/1‑149 (MQ=255) ccAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAgg > 2:202087/1‑129 (MQ=255) ccAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAgg < 1:202087/129‑1 (MQ=255) ccAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGc > 1:133238/1‑130 (MQ=255) ccAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGc < 2:133238/130‑1 (MQ=255) ccAGACCGACCT‑GATCACCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTg > 1:277008/1‑149 (MQ=255) accgaccT‑GATCGCCGGCCTCAAGCGTCAGTTGTTAAGCAAGATAGAGGCTTCAGATAACCGGGTACCAGCGTTGTGACCAGTAGCTGGCGCCGGCAGCGACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAg > 1:218530/1‑135 (MQ=255) accgaccT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAg < 2:218530/135‑1 (MQ=255) cgaccT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGt > 3:261571/1‑149 (MQ=255) cgaccT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGt < 4:124577/149‑1 (MQ=255) tCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTc > 7:99334/1‑131 (MQ=255) tCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTc < 8:99334/131‑1 (MQ=255) cAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAg > 1:134727/1‑148 (MQ=255) aGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCgg < 4:261571/149‑1 (MQ=255) ttGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGt < 2:277008/149‑1 (MQ=255) gCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAgg < 5:223539/104‑1 (MQ=255) gCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAgg > 6:223539/1‑104 (MQ=255) tCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGt > 4:272852/1‑149 (MQ=255) aGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGt < 3:272852/147‑1 (MQ=255) aGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTc > 7:162699/1‑149 (MQ=255) gactggTCACAACGCTGGGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCg < 2:269096/138‑1 (MQ=255) gactggTCACAACGCTGGGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCg > 1:269096/5‑142 (MQ=255) tctggTCACAACGCTGGGACCAGTCGGTGGCGCCGGCATCTAACAGCCGGGGCATGATCGCGAAGGCCTGTTGCATGGCTTCGGTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGt < 8:284441/131‑1 (MQ=255) actggTCACAACGCTGGGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGc > 5:147144/4‑149 (MQ=255) actggTCACAACGCTGGGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAAATCCGGt > 7:284441/4‑134 (MQ=255) tCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGaa < 1:6138/149‑1 (MQ=255) cccAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGaa > 6:28366/1‑148 (MQ=255) cAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGaa < 5:83790/146‑1 (MQ=255) cAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGaa > 6:83790/1‑146 (MQ=255) gTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCgg < 7:209834/106‑1 (MQ=255) gTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCgg > 8:209834/1‑106 (MQ=255) ttGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACAcgccgc > 7:310711/1‑149 (MQ=255) | CTTGTTGTGCGAACAAGGCCTGCACTGCTTGCCGGTGCTTGATGGCGACAAGCTGGTGGGGGTGATCACCCAGACCGACCT‑GATCGCCGGCCTCAAGCGTCAGTTGCTCAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGC > NC_002947/2680264‑2680557 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |