| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,721,400 | T→A | 6.4% | intergenic (‑362/‑80) | PP_2381 ← / → PP_2382 | hypothetical protein/putative transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,721,400 | 0 | T | A | 6.4% | 189.0 / 3.0 | 62 | intergenic (‑362/‑80) | PP_2381/PP_2382 | hypothetical protein/putative transporter |
| Reads supporting (aligned to +/- strand): ref base T (28/30); new base A (2/2); total (30/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 | |||||||||||
GGTCTGCATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTACAGCTTTTCCAAAT > NC_002947/2721259‑2721543 | ggTCTGCATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATc > 6:20529/1‑149 (MQ=255) cATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGATTGCCAAATATTGGCCAACTCAATctaaga < 2:265838/148‑6 (MQ=38) aTTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCaa < 2:6022/140‑1 (MQ=255) aTTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCaa > 1:6022/1‑140 (MQ=255) ttCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCa > 7:90369/1‑147 (MQ=255) ttCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCa > 6:316397/1‑147 (MQ=255) cAAAGAATGGGTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGGCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAg < 5:20529/148‑1 (MQ=255) aaaGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCgg < 6:242799/140‑1 (MQ=255) aaaGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCgg > 5:242799/1‑140 (MQ=255) aaaGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGa < 5:19595/149‑1 (MQ=255) aaaGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGGCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGa < 1:132979/149‑1 (MQ=255) aaTGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTTAATCGGCTCAAAGGAGTGc < 1:84186/149‑1 (MQ=255) aTGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGcc > 2:61535/1‑149 (MQ=255) aTGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGc < 4:249158/148‑1 (MQ=255) ttgttgTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCa < 6:242491/147‑1 (MQ=255) ttgttgTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCATGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCata > 5:242491/1‑149 (MQ=255) tAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATc > 7:44906/1‑149 (MQ=255) ggAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTg < 5:200882/149‑1 (MQ=255) aaaTTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCaa < 8:90369/149‑1 (MQ=255) aaaTTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCaa < 8:44906/149‑1 (MQ=255) gggTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGATTGCCAAATATTGGCCAACTCAATct < 8:81854/112‑2 (MQ=37) gggTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGATTGCCAAATATTGGCCAACTCAATct > 7:81854/1‑111 (MQ=37) ggTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAgtg > 1:341695/1‑149 (MQ=255) ttCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCaa < 6:124680/135‑1 (MQ=255) ttCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCaa > 5:124680/1‑135 (MQ=255) cGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGAt < 1:61535/148‑1 (MQ=255) ttGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCg > 7:42830/1‑149 (MQ=255) gCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGc < 2:186477/148‑1 (MQ=255) cAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCa < 8:42830/149‑1 (MQ=255) tCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAg < 6:34641/141‑1 (MQ=255) tCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAg > 5:34641/1‑141 (MQ=255) ttACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGTGATGTCGCCAGGAAGTACCCGCTAATGc < 5:316397/149‑1 (MQ=255) aCAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAg > 8:209864/1‑130 (MQ=255) aaCTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTc < 6:305535/111‑1 (MQ=255) aaCTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTc > 5:305535/1‑111 (MQ=255) tttCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTAc < 3:242537/132‑1 (MQ=255) tttCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTAc > 4:242537/1‑132 (MQ=255) tatCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCTATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACAtt > 1:285124/3‑149 (MQ=255) cATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTgc < 2:341695/148‑1 (MQ=255) aTGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATg > 1:188584/1‑137 (MQ=255) aTGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATg < 2:188584/137‑1 (MQ=255) cTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAAccc > 1:283844/1‑149 (MQ=255) aaTCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCa > 7:330573/1‑94 (MQ=255) aaTCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCa < 8:330573/94‑1 (MQ=255) cGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATg > 2:134086/1‑117 (MQ=255) cGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATg < 1:134086/117‑1 (MQ=255) tCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGaa > 4:70111/1‑138 (MQ=255) tCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGaa < 3:70111/138‑1 (MQ=255) ttAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGtt > 3:229053/1‑142 (MQ=255) ttAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGtt < 4:229053/142‑1 (MQ=255) gATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTtcgctgtcgct < 5:159499/149‑1 (MQ=255) gATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTAAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTtcgctgtcgct > 6:159499/1‑149 (MQ=255) gATTGAGATTGCCAAATATTGGCCAACTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTtcgctgtcgct > 8:236192/1‑149 (MQ=255) ttGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTa > 8:101024/1‑148 (MQ=255) gCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTACAGc > 3:108614/1‑149 (MQ=255) cAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTAc > 6:232415/1‑144 (MQ=255) cAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTAc < 5:232415/144‑1 (MQ=255) cAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTACAGCtt > 1:18455/1‑149 (MQ=255) atatTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTACAGCtttt < 2:285124/149‑1 (MQ=255) ggCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGTTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTgg < 1:82360/131‑1 (MQ=255) ggCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTgg > 2:82360/1‑131 (MQ=255) gCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTACAGCTTTTCCAAAt < 5:185394/148‑1 (MQ=255) | GGTCTGCATTCAAAGAATGGTTGTTGTAGGAAAATTCCGGGTTTCTGATTTTCGCTTGCAGAAAGCATCGGCGTTGTTACAACTTTCATGTTGAGCTCAATCCTGGCCGAGTCTTAGATTGAGTTGGCCAATATTTGGCAATCTCAATCGGCTCAAAGGAGTGCCCATATGAATCTGCAATCCAAGTGTTCAGGAGCGATGTCGCCAGGAAGTACCCGCTAATGCTGACATTGCGCATTAACCCCGGAACGCGTTCGCTGTCGCTGGGCTACAGCTTTTCCAAAT > NC_002947/2721259‑2721543 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |