Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,788,078 | T→A | 12.1% | V134D (GTC→GAC) | ahpF → | alkyl hydroperoxide reductase subunit F |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,788,078 | 0 | T | A | 12.1% | 140.6 / 11.2 | 58 | V134D (GTC→GAC) | ahpF | alkyl hydroperoxide reductase subunit F |
Reads supporting (aligned to +/- strand): ref base T (26/24); new base A (5/2); total (31/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.36e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.70e-01 |
TGCTGGCACTGCTGCAAGTGGGTGGCCACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGAGGTGTTTGGTCA > NC_002947/2787946‑2788222 | tGCTGGCACTGCTGCAAGTGGGTGGCCACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAAc < 5:215394/149‑1 (MQ=255) cACTGCTGCCAGTGGGGGGCCACCCGTCCCAGGCCCGGGCCGAAGGGATCGAGCAGAGCCAGGCCCTGGAAGGTGAATTCAACTTCGACACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCCTCCAGGCACTGAACCTGATg < 8:226193/149‑1 (MQ=255) tgcAAGTGGGTGGCCACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAAcc < 7:207320/138‑1 (MQ=255) tgcAAGTGGGTGGCCACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAAcc > 8:207320/1‑138 (MQ=255) cAAGTGGGTGGCCACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTa < 5:33130/147‑1 (MQ=255) cAAGTGGGTGGCCACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACt > 4:291297/1‑149 (MQ=255) tgggtggCCACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCGAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAAc > 4:140798/1‑149 (MQ=255) ggtggCCACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCaa > 4:58258/1‑146 (MQ=255) ggtggCCACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCaa < 3:58258/146‑1 (MQ=255) ccACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCAGTCGTGCCAGAACTGCCCGGCCGTCGGCCAGGCACTGACCCTGATCGCGGAACTCAACCCCAACg > 8:116666/1‑149 (MQ=255) cACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAg < 1:48997/114‑1 (MQ=255) cACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAg > 2:48997/1‑114 (MQ=255) cACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCCACCCCAACGt > 7:58334/1‑149 (MQ=255) cccGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTGGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTgc > 6:357920/1‑149 (MQ=255) aaaGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGt > 4:258949/1‑141 (MQ=255) aaaGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGt < 3:258949/141‑1 (MQ=255) aGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGtt > 6:363551/1‑149 (MQ=255) cAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTa > 2:211215/1‑121 (MQ=255) cAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTa < 1:211215/121‑1 (MQ=255) aGTGCCGAAGTGATCGAGCGGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCAt > 7:211254/1‑149 (MQ=255) gCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGa < 8:58334/149‑1 (MQ=255) aTCGAGCAGATCCAGGCCCCGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAAc < 4:239048/96‑1 (MQ=255) aTCGAGCAGATCCAGGCCCCGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAAc > 3:239048/1‑96 (MQ=255) aGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGc > 5:331950/1‑130 (MQ=255) aGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGc < 6:331950/130‑1 (MQ=255) gcggATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTcc < 8:211254/146‑1 (MQ=255) gATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAg > 3:264524/1‑148 (MQ=255) aTCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGa < 3:291297/149‑1 (MQ=255) cAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACg > 3:223933/1‑148 (MQ=255) cAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACg > 1:349045/1‑148 (MQ=255) ggCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAg < 5:363551/149‑1 (MQ=255) ccTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAAc < 6:36162/103‑1 (MQ=255) ccTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAAc > 5:36162/1‑103 (MQ=255) ccTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTg > 6:263563/1‑148 (MQ=255) gAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATc < 4:264524/149‑1 (MQ=255) gTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATcgcg > 5:323623/1‑148 (MQ=255) tGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCgcgc > 8:182739/1‑148 (MQ=255) gAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGTATCgcgc > 7:259518/1‑147 (MQ=255) ttCAACTTCGAAACCTACTTCTGGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGAt < 5:357920/149‑1 (MQ=255) cAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCa > 3:16933/1‑149 (MQ=255) aaaCCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTa > 1:216053/1‑149 (MQ=255) cTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAg > 2:261040/1‑112 (MQ=255) cTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGa < 4:223933/149‑1 (MQ=255) cTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCCGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAg < 1:261040/112‑1 (MQ=255) gCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTAc < 7:182739/148‑1 (MQ=255) tcctGCCCGAACTGCCCGGACGGCGTCCAGGCCCTGAACCTGATGGCGGTACTCTACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCaa < 8:259518/146‑1 (MQ=255) ttcagtGCCTGGACGACGTCCGGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTAc < 8:320962/132‑1 (MQ=255) ttcagtGCCTGGACGACGTCCGGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTAc > 7:320962/6‑137 (MQ=255) ttcagtGCCTGGACGACGTCCGGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGAg > 1:60993/6‑149 (MQ=255) gtGCCTGGACGACGTCCGGGCACTGCACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGAGgtgt > 8:36724/2‑149 (MQ=255) tGCCTGGACGACGTCCGGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGAGGTGtt > 1:135735/1‑149 (MQ=255) cctggACGACGTCCGGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGa < 5:285375/138‑1 (MQ=255) cctggACGACGTCCGGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGa > 6:285375/4‑141 (MQ=255) cccGGTCGTCGTCCAGGCACTGAAGCTGATGGCGGTACTGATCCCCAACGTGGGCCATGTTGCCATCGAGGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGAGGTGTTTg < 7:116666/149‑1 (MQ=255) cccGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGAGGTGttt < 2:216053/148‑1 (MQ=255) cGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGAGGTGTTTGGt > 1:103031/1‑149 (MQ=255) cGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGAGGTGTTTGGt < 6:13727/149‑1 (MQ=255) gACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACGGAGTATCTACCTCAACGGTGAGGTGTTTGGTCa < 2:103031/149‑1 (MQ=255) | TGCTGGCACTGCTGCAAGTGGGTGGCCACCCGTCAAAGGCCAGTGCCGAAGTGATCGAGCAGATCCAGGCCCTGGAAGGTGAATTCAACTTCGAAACCTACTTCTCGCTGTCGTGCCAGAACTGCCCGGACGTCGTCCAGGCACTGAACCTGATGGCGGTACTCAACCCCAACGTGCGCCATGTTGCCATCGACGGTGCGCTGTTCCAGGACGAAGTGGAATCGCGCAAGATCATGGCGGTACCGAGTATCTACCTCAACGGTGAGGTGTTTGGTCA > NC_002947/2787946‑2788222 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |