| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 90.3% | 91.3 / 3.3 | 31 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base A (13/15); total (14/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTC > NC_002947/278599‑278879 | cGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑aaac < 2:140199/148‑3 (MQ=255)cGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑aaa < 3:23100/147‑2 (MQ=255) tACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AA‑acccg > 3:3085/1‑146 (MQ=255) tCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTacac > 1:49829/1‑148 (MQ=255) tCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTacac > 2:154527/1‑148 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTacacac > 5:173351/1‑148 (MQ=255) aGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑ACCGCGACTACACACAAGcc > 2:180200/1‑148 (MQ=255) gtttgCTTGTCCGGTTGTCCTGTTTATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCa < 1:117758/144‑1 (MQ=255) tccggtggtccgttATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 8:155745/146‑1 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 5:175809/146‑1 (MQ=255) ggtccggtATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 7:72526/148‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa > 6:42050/1‑147 (MQ=255) ccggtATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGa < 2:49829/148‑1 (MQ=255) cggtATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAg > 1:25436/1‑148 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 1:48010/148‑1 (MQ=255) ccTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcg < 5:42050/148‑1 (MQ=255) tAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgc > 4:25530/1‑147 (MQ=255) taaaaaTTTTTAATCACCAAACTTTTTGTATTTTTTATTCACGGGGTATGTGTTACCGTGGGCCGGGGCTCTGCGGGGGA‑AACCCCGCGCCTACACAACTGCCTCACTCTCGGGGCACGGTCGGTGGGGGTTTACCCGCGAAAGGGc < 2:55955/145‑1 (MQ=255) aaaaTTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGAACGGa > 7:63336/1‑148 (MQ=255) aTTTTT‑ATGAACTAACTTTTTGTAATATTTATAGACGGGGGATTTGTTCCCGAGGGGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACGGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACa < 2:65157/148‑1 (MQ=38) aTTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg > 3:111454/1‑124 (MQ=255) ttttt‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt < 4:111454/124‑1 (MQ=255) aTGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATATGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTa > 7:173496/1‑148 (MQ=255) taactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 3:172569/148‑1 (MQ=255) tttttGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCCCTCCTACACACATGCCTCAAGATATGTGCAATGTAGGAGCGGGTTTACCCGCCAAAGGGCCGGAACAGGTTTACTCGGAGGcc > 2:34533/1‑148 (MQ=255) aGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGTTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGTAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACt < 6:173351/148‑1 (MQ=255) ggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCGCCGACCCACATGCCTCAAGATCTGTGCCCGGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcg > 2:196325/1‑147 (MQ=38) ggtaTTTGTTACAGTGTTGCGGGGGTCTTCGGTGTTAAA‑CCGGGTCGTAAAAACTTGCCTCATGATGTTTGCTCTGTTGTAGGGGTTTTACCCGCGAAAGGGCCGGTACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcgc < 2:115665/144‑1 (MQ=255) cAGAGGTGCCGGGCTCTTCGCGGGT‑AACCCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc < 5:43124/148‑1 (MQ=255) ggTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCAACACACATGCCTCAAGATCTGTGCACTGTCGCAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTAc < 3:83441/148‑1 (MQ=255) gggCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTAATCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTctt > 8:53712/1‑148 (MQ=255) ctctTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttcct < 7:105405/148‑1 (MQ=255) tCGCGGTTAAA‑CCCGCTCCACCAAACATGCCTCAAGATCTGTGCACTGTAGGTGCGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttccttc < 4:4779/146‑1 (MQ=255) | CGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTC > NC_002947/278599‑278879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |