New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	247035 =	3 (0.090)	44 (1.270)	36/288	0.1	63.3%	coding (1213/1911 nt)	yheS	ABC transporter ATP‑binding protein
	?	NC_002947	= 2179376	48 (1.390)					intergenic (+175/+93)	PP_1931/PP_5486	hypothetical protein/hypothetical protein

AGCAGGTTTGGCCGCTCCCAGGCAATCAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/247177‑247035 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTG  <  NC_002947/2179376‑2179233                                                                                                                                                                                                                                                                                                 AGCAGGTTTGGCCGCTCCCAGGCAATCAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGC                                                                                                                                             >  1:202250/1‑148   CAGGTTTGGCCGCTCCCAGGCAATCAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTG                                                                                                                                           >  6:193954/1‑148    AGGTTTGGCCGCTCCCAGGCAATCAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGT                                                                                                                                          <  8:181697/148‑1     GGTTTGGCCGCTCCCAGGCAATCAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTG                                                                                                                                         <  7:53654/148‑1     GGTTTGGCCGCTCCCAGGCAATCAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTG                                                                                                                                         <  5:195171/148‑1           GCCACTCCCAGGCAATCAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAA                                                                                                                                    <  7:110696/147‑1                  CCAGGCAATCAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACACG                                                                                                                             >  7:119469/1‑147                          TCAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCG                                                                                                                      >  8:7210/1‑146                           CAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGT                                                                                                                     <  7:7210/146‑1                             GCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAA                                                                                                                 <  8:16248/148‑1                               GCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTTACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGG                                                                                                               <  4:21111/148‑1                                    TGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCA                                                                                                          <  6:90545/148‑1                                        AGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGA                                                                                                      <  2:202250/148‑1                                              GCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCT                                                                                                   >  5:8088/1‑145                                               CCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAG                                                                                               <  2:18406/148‑1                                                              AGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTG                                                                                <  8:43513/148‑1                                                              AGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTG                                                                                <  6:8088/148‑1                                                               GAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGGCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGG                                                                               <  2:141090/148‑1                                                                AAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTTCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGC                                                                              <  3:61083/148‑1                                                                  GTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGG                                                                               >  4:34942/1‑145                                                                      ACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAA                                                                        >  7:167275/1‑148                                                                        CACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATT                                                                      >  2:130889/1‑148                                                                         ACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGGGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAGTTTGGCAAGcctctc                                                                     <  5:67234/148‑7                                                                                            CACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCG                                                  >  8:103466/1‑148                                                                                             ACCATGGAAGGCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCGTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGC                                                 <  6:18007/148‑1                                                                                               CATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCG                                               >  2:17736/1‑148                                                                                                 TGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTG                                             >  5:67879/1‑148                                                                                                  GGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGC                                            >  8:115420/1‑148                                                                                                  GGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGT                                                               >  2:88065/1‑129                                                                                                   GAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTT                                                              <  1:88065/129‑1                                                                                                     AGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGG                                         <  1:2211/148‑1                                                                                                     AGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGG                                         <  5:47579/148‑1                                                                                                        CGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGC                                      <  1:32879/148‑1                                                                                                              CGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGT                                >  6:71031/1‑148                                                                                                                        GTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGTCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGA                      <  7:41857/148‑1                                                                                                                        GTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGA                      <  5:193954/148‑1                                                                                                                        GTCGCGCAGCGTCTGCTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGA                      <  8:167275/148‑1                                                                                                                           GCGCAGCGTCTGCTCAAGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTC                   >  8:154770/1‑148                                                                                                                                       CTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTC       >  3:165447/1‑148                                                                                                                                       CTCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTG            >  7:75787/1‑143                                                                                                                                        TCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGG         <  3:34942/145‑1                                                                                                                                        TCACGCTCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGA           <  8:75787/143‑1                                                                                                                                           CGCTCCAGGCTGTGTGAAAACACGCGAATTGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTT   <  3:162908/148‑1                                                                                                                                              TCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTT   >  4:60455/1‑145                                                                                                                                               CCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTG  <  3:60455/145‑1                                                                                                                                                                                                                                                                                                 AGCAGGTTTGGCCGCTCCCAGGCAATCAGCGCGAGTGCCAGGCGGGCCTTTTCGCCACCGGAGAAGTTAACCACCGGCTCGTCGCAGCGGGCACCATGGAAGTCGAAGCCGCCAAGGAAGTCGCGCAGCGTCTGCTCACGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/247177‑247035 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTG  <  NC_002947/2179376‑2179233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.