| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 336206 = | 19 (0.540) | 4 (0.140) | 3/236 | 4.3 | 23.2% | intergenic (+54/+339) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 336326 = | 11 (0.390) | intergenic (+174/+219) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCG‑ATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCG‑CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAAGCG > NC_002947/336181‑336472 | ggCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGCAATGGCTGGAAAGCACCCCCCGCG‑CATTGAGAGAATGCGGGGGAAAAGGGGGGCGCTTTTCGGCCCGTTAG‑CGACGCCACGCCGCACCCCCaaaacc > 6:89135/1‑146 (MQ=255) cATTGACGCGGTCATTTGTGGGAGCCGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCG‑ATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCG‑CGACGCCAGGCCGCTCCCACAAAAGCCGCTTGCGCTa > 5:189486/1‑148 (MQ=255) gTCGCGAATGGGCTGCAAAGCAGCCCCGGCG‑ATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCG‑CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCAttt > 3:93109/1‑148 (MQ=255) cggggCTGCTTTGCAGCCCCGGCG‑ATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCG‑CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTACCCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCt > 7:138777/3‑148 (MQ=255) cggggCTGCTTTGCAGCCCCGGCG‑ATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCG‑CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCt > 7:111535/3‑148 (MQ=255) tGCAAAGCAGCCCCGGCG‑ATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCG‑CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTg > 7:173677/1‑136 (MQ=255) tGCAAAGCAGCCCCGGCG‑ATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCG‑CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCg > 2:87692/1‑147 (MQ=255) gCAAAGCAGCCCCGGCG‑ATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCG‑CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTgg < 8:173677/136‑1 (MQ=255) ccGGCGTATTCCAGATATGGCGCT‑CAACCGGGGGCCGCTTTGGGGCCCCGTGGCCGACCAACGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCg < 2:13084/148‑1 (MQ=255) tGAAAACGGGGGCCGCTTTGCGGCCCTTTCG‑CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTg > 8:95778/1‑148 (MQ=255) cGGCCCTTTCG‑CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTGTTTACt > 1:112726/1‑148 (MQ=255) g‑cgACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCTGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGc > 5:132816/1‑148 (MQ=255) gCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCaa < 5:76773/148‑1 (MQ=255) gCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCaa < 5:79837/148‑1 (MQ=255) tCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATaa < 7:95778/148‑1 (MQ=255) ccACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAg > 5:68068/1‑147 (MQ=255) ccACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAg > 5:54018/1‑147 (MQ=255) cacaAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGc > 2:205335/1‑147 (MQ=255) aaaaGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAAg > 5:13371/1‑148 (MQ=255) aaGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAAgcg > 5:99038/1‑148 (MQ=255) aaGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAAgcg > 2:103168/1‑148 (MQ=255) | GGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCG‑ATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCG‑CGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCAGCCGCAAGCAGGAATAAGCCAAGCG > NC_002947/336181‑336472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |