Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 4,740,819 | 2 bp→CT | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,740,819 | 0 | T | C | 93.9% | 85.9 / ‑2.9 | 34 | intergenic (+56/+697) | gltA/yeiW | citrate synthase/putative oxidoreductase |
Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (14/17); total (14/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.96e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | NC_002947 | 4,740,820 | 0 | G | T | 91.2% | 98.3 / NA | 34 | intergenic (+57/+696) | gltA/yeiW | citrate synthase/putative oxidoreductase |
Reads supporting (aligned to +/- strand): ref base G (0/3); new base T (14/17); total (14/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.51e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGCCA > NC_002947/4740689‑4740951 || aaGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCTTTGCCCTGAAAGACCGCAAGTAAGCTGAAGTAGCCGAACGAAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcgcg > 6:42946/1‑148 (MQ=255) gCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGc < 6:125622/148‑1 (MQ=255) gcgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGaa < 1:156101/148‑1 (MQ=255) gcgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGaa < 2:45144/148‑1 (MQ=255) cgcCAGCGGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAag < 8:74013/148‑1 (MQ=255) tccAGCTGTACACCGGCGAGCAGAAGCGCGAAATCGTTTCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAaga < 8:128942/147‑1 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGG‑CAAGGCCGCGAaga < 5:82770/148‑1 (MQ=38) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAaga < 2:46186/148‑1 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAaga < 7:14403/148‑1 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCGCTTCGCGGC‑CTTGCCCGCGAaga < 3:15621/148‑1 (MQ=255) aGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAAGAGGc < 2:62519/148‑1 (MQ=255) tGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGCCCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCCCATAGCGGC‑CCTGCCCCCGACGCGGCCgg > 5:114338/1‑148 (MQ=255) acacCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAAGAGGCCGGc > 7:41031/1‑146 (MQ=255) gcgACATGGTGGCCCTGAACGACCCAAATTACGCTGCAGTAGCCGAACGCAATACGGGTGCCCTCGGGCAGCTTTTTTTTTTTGTCCTGG‑GCCGGCCTCTTCGCGGC‑CTTGCCCGCGAATAGGCCGGCACAGACACCACAAAACCTCa < 8:30034/148‑1 (MQ=255) gCCCTGAAAGACGGCATGTAAGGTGCAGTAGCCTAACGCAAGAAGGGTGCCGTGGGGCAG‑CTTTTTTTATTTGTCTTGTGCCGGCCTCTGCGCGGC‑TTTGCCCGCTAATAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTcc < 8:21874/147‑1 (MQ=255) tGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTAGCGGC‑CTTGCCCCCGAAGAGGCCGGCACAGACCCCACAAAACCTCAGGTTTTATccgccc > 8:84809/1‑147 (MQ=255) cGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCa > 6:661/1‑148 (MQ=255) cGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCAGCCAAGAGGCCGGCCACGACACCACAAAACCTCAGGTTTTCTACGCACCcgcacgca > 6:7769/1‑148 (MQ=255) tAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGCAGCGGCCGGCCCAGCCACCCCAAAACCTCACTTTTTATCCCCCCGCGCACCCAGCCCtt > 1:152334/1‑148 (MQ=255) gcgccAGTCGCCCACCGCACGACGGCGGCCCGCGGGCAGCC‑TTTTTTATTTGTCGTGGGCCGGCCGCTTCGCGGC‑CTGGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCa < 8:119189/144‑1 (MQ=255) gCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCGGGCCTCTTCGCGGC‑CTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCa < 7:120876/148‑1 (MQ=255) tccAGTAGCCGAACGAAAGACGGCTGCCCGCGGGCAGCC‑TTTTTAATTTGCCCGGGGCCGGCCTCTGCGCGGC‑CTGGCCCGCTAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAgg < 5:12601/146‑1 (MQ=255) cAGTAGCCGCACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CGTGCCCGCGACGCGGCCGGCCCAGACCCCACAAACCCGCAGGTTTTCTCCGCCCGCTCCCGCAGCCCTTTGAgggg > 7:9562/1‑147 (MQ=255) cAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CATGCCCGCGAAGAGGCCGGCCCAGACACCACAAAACCTCAGTTTTTATACGCCCGCTCACGCAGCCCGTTCAGGGt > 8:159540/1‑148 (MQ=255) cAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCCCGGC‑CTTGCCCGCGAATAGGCCCGCACAGACACCACAAAACCGCAGTTTTTCTACGCCCGCTCACGCAGCCCTTTCAGGGt > 2:116238/1‑148 (MQ=255) gTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTGCGCGGC‑CTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTAt < 7:24613/148‑1 (MQ=255) taaaaaagGCTGCCCGAGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTAGCGGC‑CTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTACGCCCCCTCACCCAGCCCGTTCAGGGTATTGAACGgcg > 2:161141/6‑147 (MQ=255) cAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCTAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCa < 2:5804/148‑1 (MQ=255) aaaagGCTGCCCGAGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCAt > 8:152185/3‑147 (MQ=255) agGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATccac < 7:53518/148‑1 (MQ=255) tCGGGCCGCC‑TTTTTTATTTGTCCTGGGCCGGCCTCTTCGCGGC‑GTGGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACtt < 5:107265/148‑1 (MQ=255) gctgttttttttttttTGCGGGGCCCGCCTCGGCGGGGCGCTGGCCCGCTTCGCGCCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACttgttg < 6:126973/144‑1 (MQ=255) ccttttttATTTGTCCTGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAAGAGGCCGGCACAGCCACCACCAAACCTCAGTTTTTCTCCGCCCGCTCCCGCAGCCCGTTCAGGGGATTGAACGGCGCATCCACCACGAACTTGTTGGcca > 7:88125/3‑148 (MQ=255) ccttttttATTTGTCCTGTGCCGGCATCTTCGCGGC‑CTTGCCCGCCAAGAGGCCGGCACAGCCCCCCCCACACCCCAGGTTTTGTCCGGCCGCGCACGCAGCCCTGTCAGGGTATTGAACGGCGCATCCACCCAGAACTGGTTGGcca > 6:179419/3‑148 (MQ=255) || AAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGC‑CTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGCCA > NC_002947/4740689‑4740951 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |