New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586029	16 (0.210)	22 (0.310)	16/258	5.4	43.2%	intergenic (+112/+103)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586109	43 (0.600)					intergenic (+192/+23)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
Rejected: Coverage evenness skew score above cutoff.

GACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TCTGC‑GGTAAACCCGCTCCTACCAGGGA‑CGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGG  >  NC_002947/4585882‑4586118                                                                                                                                                     |                                                                                             gACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCcac‑tt                                                                                             >  7:212816/1‑148 (MQ=255)   cccGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGATAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCctc‑ttcg                                                                                           >  5:405260/1‑146 (MQ=255)   cccGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCctc‑ttcg                                                                                           <  7:334086/149‑4 (MQ=255)           gCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGC‑gggtaaa                                                                                  >  1:176774/1‑144 (MQ=255)                    cACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTcc                                                                           >  5:401680/1‑148 (MQ=255)                          tGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCGATTGAAAGCTTGAGGTTGTCCGGGTGATTGGCAAGGTGAAGATCTTGCATTGATCTGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAgg                                                                    <  6:256782/149‑1 (MQ=38)                               gCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGA‑ccg                                                              <  2:176774/149‑3 (MQ=255)                               gCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGACCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGA‑ccg                                                              >  7:129060/1‑147 (MQ=39)                                 ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGA‑ccgtg                                                            >  1:342332/1‑145 (MQ=39)                                        tAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCt                                                      <  7:337957/149‑1 (MQ=39)                                           aCCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTg                                                    >  7:238151/1‑148 (MQ=39)                                                 gCACCGGCTTGAACAGCTGATCTGCTCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATgcgg                                             <  6:32279/149‑1 (MQ=38)                                                          tGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGcccc                                    <  8:238151/149‑1 (MQ=39)                                                           gAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTAc                                                                        <  5:413920/112‑1 (MQ=38)                                                           gAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTAc                                                                        >  6:413920/1‑112 (MQ=38)                                                                 cTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTTAAACCCCAACAAACAGGGACCCGGGCGGCCGTGTATTCGGCGCTGCCCCggggttg                             >  5:46812/1‑145 (MQ=255)                                                                 cTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAgg                             <  6:401680/149‑1 (MQ=39)                                                                         cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑ggg                      <  2:342332/147‑1 (MQ=38)                                                                         cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑gg                       <  6:303184/146‑1 (MQ=38)                                                                          gctgctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑gg                       <  2:400971/145‑1 (MQ=38)                                                                          gctgctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑gg                       >  1:400971/1‑145 (MQ=38)                                                                              ctCCATTGACAGGTGGAGGATGACCGGGAGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑GGGTTTAccc               <  7:191487/149‑1 (MQ=37)                                                                              ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCCCTCCTAACACGGACCCTGGCGGCCGTGAATGCGGCGCGGCCCCGGGTTGGAGCGGGGTTTAcc                >  1:42785/1‑149 (MQ=255)                                                                                 cATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑GGGTTTACCcg              <  7:17271/147‑1 (MQ=38)                                                                                      aatgtttGAGTATGCCGGGGTGTTTGGCATGGTCAAGATCTTGCATTGATCGGGCCGGCCTCTTCGGG‑GTTAAACCCGCTCCAACCCGGCACCGTGCCGGCTTTTATTGCGGCGGTGCCCCGTTTAGGTGG‑GGTTTTACCCGCGAaga        <  6:46812/143‑1 (MQ=255)                                                                                         ggTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑GGGtt                    >  6:100887/1‑133 (MQ=38)                                                                                         ggTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑GGGtt                    <  5:100887/133‑1 (MQ=38)                                                                                           tttcggATGACGGGGGGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTCGCGGGTAACCCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑GGTTTTACCCGCGAAGAggccgg  <  2:42785/145‑1 (MQ=37)                                                                                           ttGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TTAGCGGGTAAACCCGCTACTAACAGGGACCCTGCCGGCCGTGAATGCGGCGCTGGCCCTGGTAGGAGC‑GGGTTTAACCGCGAAGAggccgg  >  3:347667/1‑149 (MQ=255)                                                                                                                                                     |                                                                                             GACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTC‑TCTGC‑GGTAAACCCGCTCCTACCAGGGA‑CGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGG  >  NC_002947/4585882‑4586118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.