New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5858864	46 (0.590)	8 (0.130)	7/220	7.8	19.2%	intergenic (+42/+96)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	= 5858909	31 (0.510)					intergenic (+87/+51)	PP_5134/PP_5135	hypothetical protein/ABC transporter substrate‑binding protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAT  >  NC_002947/5858722‑5859008                                                                                                                                               |                                                                                                                                                 aaGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACgccggat                                                                                                                                            >  7:360653/1‑143 (MQ=255) aaGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGggcggc                                                                                                                                            <  7:430589/149‑1 (MQ=255)   ctgcgGGTGCGCCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGccg                                                                                                                                          >  7:291156/3‑148 (MQ=255)   ctgcgGGTGCGCCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTACTACCGGCGGCCt                                                                                                                                          >  8:355109/3‑149 (MQ=255)     gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCttt                                                                                                                                        <  1:105316/149‑1 (MQ=255)     gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCttt                                                                                                                                        >  3:304586/1‑149 (MQ=255)             aCCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAac                                                                                                                                 >  6:270720/1‑148 (MQ=255)             aCCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGGAAACCCGCGCCTACGGGCGGCCTTTGTACAacc                                                                                                                                >  7:387039/1‑149 (MQ=255)               ccGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAaccac                                                                                                                              <  1:212171/149‑1 (MQ=255)                 gCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCg                                                                                                                            <  3:111809/149‑1 (MQ=255)                     tGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGAtgt                                                                                                                        <  5:270720/149‑1 (MQ=255)                        tacACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCg                                                                                                                     <  3:34242/147‑1 (MQ=255)                        tCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAac                                                                                                                                 <  8:187264/137‑1 (MQ=255)                        tCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAac                                                                                                                                 >  7:187264/1‑137 (MQ=255)                          cACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTc                                                                                                                   >  4:334026/1‑149 (MQ=255)                           aCCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTcc                                                                                                                  <  4:215498/149‑1 (MQ=255)                             ccTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGCTGTGCGTcccc                                                                                                                >  5:115515/1‑147 (MQ=255)                             ccTGAATCCCGGAGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCAACGGGCGGCCGTTGGACCACCACCGAAGTGCCTcccc                                                                                                                >  8:72372/1‑147 (MQ=38)                                 aaTCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTccaccac                                                                                                             <  8:57366/148‑1 (MQ=255)                                 aaTCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTccaccac                                                                                                             >  5:296333/1‑148 (MQ=255)                                  aTCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTccaccacc                                                                                                            <  8:305594/148‑1 (MQ=255)                                       ggggCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCg                                                                                                      <  6:296333/149‑1 (MQ=255)                                        gggCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGATCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCt                                                                                                                                          >  1:428741/1‑112 (MQ=255)                                        gggCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCt                                                                                                                                          <  2:428741/112‑1 (MQ=255)                                         ggCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGc                                                                                                    <  4:304586/149‑1 (MQ=255)                                                cTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAg                                                                                             >  8:166088/1‑149 (MQ=255)                                                 tGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGTTTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAAACCGCTCCTACGGGCGGCCTTTGTACAACCAACCATGTGCGTCCACCACAAATCCGGCGTAGGAGc                                                                                            >  1:101037/1‑149 (MQ=255)                                                   aaTCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCgg                                                                                          <  3:334026/149‑1 (MQ=255)                                                        ggCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAAACCGCGCCTACGGGCGGGCGTTGTACAAACACCGATGTGGGTGCACCACCAATCCGGGGTAGGAGCGGGTTTa                                                                                     >  7:392369/1‑149 (MQ=255)                                                         gCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTAc                                                                                    <  7:166088/149‑1 (MQ=255)                                                            gAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCCCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATACGGCGTAGGAGCGGGTTTACCcg                                                                                 >  1:281778/1‑149 (MQ=255)                                                               cGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCcgc                                                                                <  6:126855/147‑1 (MQ=255)                                                               cGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCcgc                                                                                >  5:126855/1‑147 (MQ=255)                                                                 gCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGt                                                                                        >  3:91218/1‑137 (MQ=255)                                                                 gCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGt                                                                                        <  4:91218/137‑1 (MQ=255)                                                                                 gcgcTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCCCGGGTAAAACCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTACACAAACAATACGGAGTAGGAGCCGGTTTACCAGCGAAGAGGCCGCCCCTGCaa                                                             >  4:105820/1‑148 (MQ=255)                                                                                                                        ttCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAg                                                                                                >  4:135745/1‑74 (MQ=255)                                                                                                                        ttCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAg                                                                                                <  3:135745/74‑1 (MQ=255)                                                                                                                               gTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCg                    <  1:391142/143‑1 (MQ=255)                                                                                                                               gTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGAGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCg                    >  2:391142/1‑143 (MQ=255)                                                                                                                                    cccGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCtt         >  7:375520/1‑149 (MQ=255)                                                                                                                                     ccGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTgg                                         <  2:193990/116‑1 (MQ=255)                                                                                                                                     ccGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTgg                                         >  1:193990/1‑116 (MQ=255)                                                                                                                                     ccGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTg        >  2:69345/1‑149 (MQ=255)                                                                                                                                           cTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAt  >  5:213166/1‑149 (MQ=255)                                                                                                                                           cTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAt  >  7:47339/1‑149 (MQ=255)                                                                                                                                           cTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAt  >  6:175013/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                 AAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTTGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACCACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGCGCTTGCGCCAT  >  NC_002947/5858722‑5859008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.