| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,070,246 | 1 | . | G | 94.3% | 215.9 / 6.6 | 71 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (4/0); new base G (31/35); total (35/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.69e-01 | |||||||||||
| * | NC_002947 | 1,070,246 | 2 | . | A | 94.4% | 219.4 / 6.4 | 71 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (4/0); new base A (31/36); total (35/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.39e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 | |||||||||||
CCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAG > NC_002947/1070105‑1070380 || ccgccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑G‑‑agatc > 2:21087/1‑144 (MQ=255) gccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑G‑‑agatcgag > 4:254657/1‑142 (MQ=255) tCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGcgccgc > 2:2713/1‑149 (MQ=255) cATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCcgcgcg > 5:28895/1‑149 (MQ=255) cATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCcgcgcg < 3:254657/149‑1 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGTGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCgcgggcgg < 4:30191/148‑1 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCgcgggcg < 6:339941/147‑1 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCgcggg < 3:369820/145‑1 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCccgcgcgg > 1:191809/1‑148 (MQ=39) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCccgcgcgg < 2:191809/148‑1 (MQ=39) tAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGCTGGCTTTCAAGCTGAAGACGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGgcgc < 8:297130/149‑1 (MQ=39) aTGCTGATCCCGGCATGGATCGCTGTGCTGTGCGTGGCTTAAAACCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGATAGGTTTTCGGCGCCAGTGA‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTc > 4:367662/1‑149 (MQ=38) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGAt > 8:289918/1‑149 (MQ=255) aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑TGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGAtct < 5:283875/148‑1 (MQ=255) ccGGCTTGGATCGCTGTGCTGTGGGTGGCTTTCATGCTGAAGAAGGCTCCCCCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTca < 1:344232/149‑1 (MQ=37) ccGGCATGTATCGCTGTGCTGTGGGTGGCTTTCAAGCTTAAGAAGGCT‑‑CTCAAGGCCAAGGGCTGATCGGGTTTTTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTcaca < 6:283315/149‑1 (MQ=38) cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCt < 8:108185/138‑1 (MQ=38) cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCt > 7:108185/1‑138 (MQ=38) cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGATAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGAGCGGGCGGCGCTCTATCACACAg > 4:250178/1‑149 (MQ=38) gATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCCCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATg > 7:342972/1‑148 (MQ=255) ctgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCt > 1:389883/1‑126 (MQ=38) ctgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCt < 2:389883/126‑1 (MQ=38) tgggtggCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGATTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCa > 1:104775/1‑149 (MQ=255) cgggtcgCTTTCAAGCTGAAGAAGGCT‑‑CTCCAGGCCAAGGGCTGATCGTGTTTGGTCGTAAGGGGTATGCCGGTAGGTTTTCGGCGCC‑‑TGTTAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCa < 6:354443/148‑1 (MQ=37) tggCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGc < 5:272994/136‑1 (MQ=255) tggCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCg > 3:383386/1‑149 (MQ=255) tttCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTaa > 7:320755/1‑136 (MQ=255) tttCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTaa < 8:320755/136‑1 (MQ=255) tttCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTg > 2:92598/1‑149 (MQ=255) tttCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTg > 2:149037/1‑149 (MQ=255) tttCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCg < 2:159061/112‑1 (MQ=37) tttCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCg > 1:159061/1‑112 (MQ=37) taaaGATGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTAAGGTTTTCGGCGCC‑‑TGT‑‑GACATCGAGCGCCGCGCGGGCGGCGCTc > 7:263434/3‑109 (MQ=37) tCAAGCTGACGAAGCCT‑‑CGCCAGGCCAAGGGCGGATCGGGTTTGTTCGTACGGGGTAGGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTg < 6:256143/147‑1 (MQ=37) tCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTc > 7:263433/1‑109 (MQ=255) tCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTc < 8:263433/109‑1 (MQ=255) tCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATGTCACAG‑GCCATGAAAGCCTAAAGGCATGCGTCTggc > 3:74890/1‑149 (MQ=38) aagaagGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGa > 3:135999/1‑149 (MQ=255) cT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAg < 3:74867/121‑1 (MQ=255) cT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAg > 4:74867/1‑121 (MQ=255) cT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTc < 1:149037/149‑1 (MQ=255) t‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcc > 4:375694/1‑149 (MQ=255) gCCAGGCCAAGGTCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGTGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcc < 1:92598/148‑1 (MQ=38) ggCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTcc < 4:383386/149‑1 (MQ=255) cAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATg < 8:342972/149‑1 (MQ=255) cAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATg > 6:207667/1‑149 (MQ=255) aaGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGc < 5:211959/104‑1 (MQ=255) aaGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGc > 6:211959/1‑104 (MQ=255) aTCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCa < 1:2713/147‑1 (MQ=255) tCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtg < 7:289918/149‑1 (MQ=255) cGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgc > 8:220176/1‑149 (MQ=255) gggTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgct > 1:49190/1‑149 (MQ=255) gTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgctgc > 4:375321/1‑149 (MQ=255) gTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgctgc > 7:392782/1‑149 (MQ=255) gTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAagctgc > 1:212616/1‑149 (MQ=255) ttCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTcc < 6:28895/148‑1 (MQ=255) tAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGcc > 2:268064/1‑147 (MQ=255) gggtTATGCCGTTAGGGTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAGTGCTGCCTCCGCCAAgca < 3:367662/149‑1 (MQ=38) gggTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcac < 4:135999/149‑1 (MQ=255) gggTATGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcac < 2:104775/149‑1 (MQ=255) tGCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcacgcac < 3:375694/148‑1 (MQ=255) gCCGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAg > 1:60103/1‑149 (MQ=255) cGTTAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtg > 1:63788/1‑149 (MQ=255) tttAGGCTTTCATCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAG‑GCGCCGAAAACCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtgg > 4:104925/2‑149 (MQ=21) ttAGGTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCGCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTACCCGTACCAGCCCCGAAATGCTGCCACCGCCAAGCACGCACAgtggg > 7:138376/1‑148 (MQ=25) ttAGGTTTTCGGCGCC‑‑TGTGAG‑‑AGCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt < 3:250178/149‑1 (MQ=255) tAGGCTTTCATCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAG‑GCGCCGAAAACCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggt < 3:104925/148‑1 (MQ=21) gTTTTCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTAc < 2:49190/149‑1 (MQ=255) ttttCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACa < 7:220176/149‑1 (MQ=255) ttCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAg < 2:63788/148‑1 (MQ=255) ttCGGCGCC‑‑TGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAg < 5:207667/148‑1 (MQ=255) || CCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCT‑‑CGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCC‑‑TGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAG‑GCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAG > NC_002947/1070105‑1070380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |