| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,634 | 0 | C | T | 38.9% | 91.3 / 113.9 | 114 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (35/34); new base T (23/21); total (58/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.88e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 121 total aligned reads displayed.
AGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAG > NC_002947/195495‑195778 | gACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACcg < 3:113445/143‑1 (MQ=39) aCCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCt > 6:264937/1‑149 (MQ=39) ggCCAATGACGTCTACAACAACGGTTCGCCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGCCCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACgg > 5:89937/1‑149 (MQ=255) gcgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGc < 5:211890/146‑1 (MQ=0) gcgaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGc < 6:143499/146‑1 (MQ=0) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTACGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGcc > 8:82178/1‑149 (MQ=12) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc > 5:105497/1‑149 (MQ=37) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc < 4:380808/149‑1 (MQ=37) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg < 6:169158/149‑1 (MQ=17) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCgg > 6:281310/1‑149 (MQ=37) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATACGACCCCGGCTCAGACCACGATCAACGA‑CACGGTCGACACCACCACCGCGACCCTGACCGCGAGCCCCTCgg > 8:161253/1‑149 (MQ=255) aacaacGTTTCGACCTTCAGCGTCACCATCGAGAACGCCACCGGAGTTAATTTCGAGCATCTTACCCC‑TAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGTCGAGCCCGTCGGTCAc < 7:349348/149‑1 (MQ=11) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc < 6:316596/149‑1 (MQ=17) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCCCCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc > 4:398084/1‑148 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGa < 5:60440/134‑1 (MQ=37) aaacCGTTCGACCGTCAGCGTCACCATCGAGAACGCAACAGGCGGTAATTTCGAGCAACTGAAAAC‑GAATCAGAACCCGGCAAAGACCACGATCAAAGA‑CTCGGTCGACACCACTACCCCGACCAAGAACGAGAGCCAGTCGGACAcc > 4:100542/2‑148 (MQ=2) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGCCCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 3:295231/1‑148 (MQ=12) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 5:76451/1‑148 (MQ=17) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 4:195115/149‑1 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGCCCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 3:174126/1‑147 (MQ=12) ggTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCg > 3:134055/1‑129 (MQ=38) ggTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGATCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCg < 4:134055/129‑1 (MQ=38) gACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 5:264937/148‑1 (MQ=37) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGGAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGCCACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc > 1:97647/1‑149 (MQ=11) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 4:231939/149‑1 (MQ=17) gccACCATCGATTACGCGACAGGCGGTTATTTCGAGCAACTGTCCCG‑GATTCCGACCCCGGCTCTGACCAGCATCAACGA‑CTCGGTCGAGACCACAACCGCGACCCTGACGGCGAGCGCGTCGGTCACCGAAGGCGGCGTGATCACTTa < 8:137917/147‑1 (MQ=11) cATCGATAACGCCACCGGAGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg < 7:161253/149‑1 (MQ=255) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg < 3:82692/149‑1 (MQ=39) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 6:185755/1‑149 (MQ=17) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 2:223690/1‑149 (MQ=17) tCGAGTACGCCAGAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTg < 4:174126/149‑1 (MQ=255) gagaACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 8:40411/148‑1 (MQ=39) gagaACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa > 7:40411/1‑148 (MQ=39) aaCGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt > 5:217447/1‑149 (MQ=39) aaCGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 5:281310/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 6:105497/149‑1 (MQ=39) cGCCACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACGACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 7:82178/149‑1 (MQ=12) ccACAGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 5:99462/1‑148 (MQ=17) cACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTg < 5:280515/145‑1 (MQ=39) cACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTg > 6:280515/1‑145 (MQ=39) aggcggTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTg < 2:27000/135‑1 (MQ=17) aggcggTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTg > 1:27000/2‑136 (MQ=17) aggcggTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 5:190486/148‑1 (MQ=18) ggTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc > 5:133718/1‑149 (MQ=21) gTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc < 2:97647/149‑1 (MQ=21) gTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTCACACCGTGACCCTGAGCAACCCTGcc < 1:223690/149‑1 (MQ=21) tttCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCAGTCGGGCAACGAAGGCGGCGGGAGCACTGACCCCCTCGCCCTGCGCAGCCCTGccacga > 8:258131/1‑145 (MQ=14) gAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 3:398084/148‑1 (MQ=39) aGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 1:153069/149‑1 (MQ=17) aGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 8:167796/149‑1 (MQ=17) gCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGTCCAGACGCCgg > 2:417461/1‑149 (MQ=12) cAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt < 7:240121/149‑1 (MQ=17) tGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 5:256474/135‑1 (MQ=17) tGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAcc > 4:44034/1‑149 (MQ=38) tGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt < 8:386886/107‑1 (MQ=38) tGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 7:386886/1‑107 (MQ=38) aCCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGAcc < 6:159436/147‑1 (MQ=2) aCCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt > 7:388213/1‑149 (MQ=255) ccc‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg > 1:335416/1‑128 (MQ=25) ccc‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg < 2:335416/128‑1 (MQ=25) ccc‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 7:333247/137‑1 (MQ=21) ccc‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc > 8:333247/1‑137 (MQ=21) ccc‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 2:385757/1‑148 (MQ=255) ccc‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 5:124936/1‑148 (MQ=255) cc‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 2:351659/149‑1 (MQ=255) cc‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCAGTAACCGTGaa > 1:351659/1‑149 (MQ=255) c‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 6:77260/129‑1 (MQ=17) c‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa > 3:222855/1‑99 (MQ=37) c‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 4:222855/99‑1 (MQ=37) c‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 6:217447/149‑1 (MQ=255) aaTCCGACCCCGGCTCAGACCACGATCAACGATCTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg > 1:260898/1‑125 (MQ=255) aaTCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg < 2:260898/124‑1 (MQ=40) cGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTc > 8:214028/1‑148 (MQ=255) ccGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACgg > 6:106940/1‑149 (MQ=37) ccGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGGCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACgg < 4:295231/149‑1 (MQ=255) cagCTCAGACCACGATCAACGA‑CTCGGTCGACATCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc > 3:11894/3‑149 (MQ=255) aGACCACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc > 4:78731/1‑148 (MQ=37) gACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa < 3:192981/149‑1 (MQ=39) aCCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGTCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt > 2:240239/1‑149 (MQ=255) ccACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 4:150995/1‑128 (MQ=37) cACGATCAACGA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 2:168727/1‑149 (MQ=255) cGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAcc < 6:124936/149‑1 (MQ=39) tCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt > 8:6543/1‑149 (MQ=39) aaCGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 1:381279/100‑1 (MQ=37) aaCGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc > 2:381279/1‑100 (MQ=37) aCGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGaa < 6:9734/149‑1 (MQ=39) gA‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc < 1:385757/149‑1 (MQ=255) a‑CTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCg > 1:186640/1‑149 (MQ=255) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 3:44034/149‑1 (MQ=255) cTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg < 7:214028/149‑1 (MQ=39) ggTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 3:196298/1‑148 (MQ=39) gTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa > 3:255387/1‑110 (MQ=40) gTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 4:255387/110‑1 (MQ=40) tCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaa > 3:376604/1‑148 (MQ=39) acatCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc < 4:11894/149‑1 (MQ=255) acacCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc > 5:180952/1‑149 (MQ=39) accaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCa < 6:89937/149‑1 (MQ=39) ccactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 6:76451/149‑1 (MQ=255) ccactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 5:106940/149‑1 (MQ=255) ccaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCaaa < 6:27133/120‑1 (MQ=12) | AGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCC‑GAATCCGACCCCGGCTCAGACCACGATCAACGA‑CTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAG > NC_002947/195495‑195778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |