| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 86.0% | 144.5 / 18.1 | 50 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (3/4); new base A (21/22); total (24/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCG > NC_002947/278595‑278880 | aTGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑t < 3:2203/148‑1 (MQ=255) gCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑T‑aaaacc > 1:212771/1‑145 (MQ=255) gCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑T‑AA‑accc > 4:233356/1‑148 (MQ=255) cTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑T‑AA‑acccg > 2:284297/1‑147 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTaca > 2:349459/1‑148 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGAATTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTac < 1:350123/147‑1 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACACTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCCCTTTCGCGGG‑‑TAAA‑CCCGCTCCTacagtgca > 6:166617/1‑144 (MQ=38) cAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACACGcc < 6:151221/149‑1 (MQ=255) aGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCt > 2:283338/1‑149 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAg < 1:293294/149‑1 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGAGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTc > 3:53551/1‑145 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt > 5:390945/1‑149 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCTGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 7:81484/147‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCCCTCCTACACACATGCCTCAAGATCagtg > 2:117740/1‑148 (MQ=255) gtacggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 3:48079/144‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATc > 3:229286/1‑141 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATc < 4:229286/141‑1 (MQ=255) cggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGc < 1:283338/149‑1 (MQ=255) cggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGc > 1:168991/1‑149 (MQ=255) gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 2:209798/149‑1 (MQ=255) taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGtt > 7:200494/1‑145 (MQ=255) taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGtt < 8:200494/145‑1 (MQ=255) aCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACt > 6:1039/1‑131 (MQ=255) aCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACt < 5:1039/131‑1 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑AACGCTCCTACACACATGGCTAAAGATCTGTGCACTGTTGTAGCGGGTTTACCcg > 3:221354/1‑149 (MQ=255) cccTAATGATATATAAAATTTTTATGAACTTACTTTTTGGAATATTTATAGAAGGGGTATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CGCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAccc < 8:295073/148‑1 (MQ=255) accTTATGCTTTTTAAAATTTTTATGTACTAACTTTTTGGAATAATTATAGAAGGGGGAATTTTTACAGACGTGCCGGGGGC‑CTCGCGGGTAT‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAcc < 1:117740/147‑1 (MQ=255) tAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg > 4:193439/1‑138 (MQ=255) tAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 3:193439/138‑1 (MQ=255) tAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAccc < 5:117953/145‑1 (MQ=255) tAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAccc > 6:117953/1‑145 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGa > 5:299444/1‑148 (MQ=255) tGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAg > 6:422814/1‑149 (MQ=255) aTTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGT‑T‑AA‑CCCGCGCCTACACACCAGCCTGAAGGTCTGTGCACTGTAGGAGCGGGTTTTACCGCGAAAggg > 6:266220/1‑149 (MQ=255) ataAAATTTTTATGAACTAACTTTTTGGAAAATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑ACCGCTCCTAAACACATGCCTCAAGATATGTGCACTTTATGAGCGGGTTTACCAGCGAAAGGGACg > 1:37278/1‑148 (MQ=255) aaaaaTTTTTTTTAACTAACTTTTTCTAAAATTTATTGAAGGGTGATTTGTTACATTGGTGCCGGGCTC‑TTCGCGTT‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTTTAGGTGGGGGTTTACCCGCGAAAGGGCCgg < 2:37278/147‑1 (MQ=255) ttATGAACTAACTTTTTGGAATATTTATAGAAGGCGGATTTTTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTAAACACATGCCTCAATATCTTTGAACTATAGGAGCGGGTATAACAGCGAAAGCGCCTGAACAgcta > 1:71897/1‑145 (MQ=255) taactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAg < 1:284297/149‑1 (MQ=255) actTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgcg > 6:110315/1‑120 (MQ=255) actTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgcg < 5:110315/120‑1 (MQ=255) ttttaaTATTAATACATGGGGTATTTTTTACCTCGGTGCGGGGCTC‑TTCGCGGT‑‑TAAA‑CCCGCTCCTAAACACTTCCCTCAATATCTTTTTATTTTTGTTGGGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCa < 8:272743/144‑1 (MQ=255) gAATATTTATAGAAGGGGGATTCTATACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑ACCCCTACAACACACAAGCATAAAGATGTGTGCACAGTAGGAGGGGGGTGACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGACACACTcc > 7:67528/1‑149 (MQ=255) atatTTTTAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGGT‑T‑AA‑CCGTCTCCTACACACTTGCCTCATGATCTTTGCACGGTAGGTGCGTGTTTACCCGCTAAAGGGCCGGAACAGGTTTACTCGTAGGCCGCTGTccc < 2:71897/148‑1 (MQ=255) atTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCg < 5:342075/139‑1 (MQ=255) atTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCg > 6:342075/1‑139 (MQ=255) tttATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAgg < 5:422814/149‑1 (MQ=255) caGGGGGTTTTTTTACTTCGGGGCCGGGCTC‑TTCGGGGG‑‑A‑AACCCCGCTCCTACACACTTGCCTCACGATCTTTGCACTTTTGTCGGGGTTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTg < 4:221354/147‑1 (MQ=255) tttGTTACAGAGGTTCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGaa < 4:53551/148‑1 (MQ=255) ttGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAAc < 6:299444/148‑1 (MQ=255) tACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTAAAGATGTGTGCACTGTAGGTGCGGGTTCACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc < 1:349459/148‑1 (MQ=255) aCAGAGGTGCCGGGCTC‑TTCGCGGG‑‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc > 4:151771/1‑149 (MQ=255) c‑tTCGCGGGA‑A‑AA‑CCCGACCCAACAAACATGCCACAACATCTGGCCACTGTCGGAGCGTTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCg < 3:1335/149‑1 (MQ=255) | ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTC‑TTCGCGGG‑‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCG > NC_002947/278595‑278880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |