| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 4,586,035 | +G | intergenic (+118/+97) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,586,033 | 1 | . | G | 90.0% | 57.7 / 0.7 | 20 | intergenic (+116/+99) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (6/12); total (8/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TCTGC‑GGTAAACCCGCTCCTACCAGGGA‑CGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGT > NC_002947/4585887‑4586089 | gccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGC‑gg < 1:394731/149‑1 (MQ=255)gccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGC‑gg < 5:82423/149‑1 (MQ=255) ccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGC‑ggg < 8:405069/149‑2 (MQ=255) gAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGc < 8:281193/149‑1 (MQ=255) gAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGc > 7:281193/1‑149 (MQ=255) tccACCGGTGAATGCTTAAGGGTAGACCACGGCACCGGCGTGAACATCTGATCTGCGCTGCTCCATTGAAAGGTTGATGATGACCGGGTGGTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTc < 4:40298/148‑1 (MQ=255) aCCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTa > 2:220887/1‑149 (MQ=255) tGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAg < 1:57569/149‑1 (MQ=255) tGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAgg < 1:220887/149‑1 (MQ=255) tGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACACGCTCCTACCAgg > 3:286562/1‑149 (MQ=255) aaGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAGGGa < 3:37104/149‑1 (MQ=255) ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAGGGA‑cc < 2:238490/146‑2 (MQ=255) ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAGGGA‑cc > 1:238490/1‑145 (MQ=255) ggTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGc < 5:303829/149‑1 (MQ=39) gTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGcc < 6:412934/149‑1 (MQ=39) aCCATGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑ACCGCATAT‑TCGAT‑GGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTg > 4:197860/1‑148 (MQ=255) cACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCGACTACCAGGGACCGTGCCGGCCTTGAAt > 7:305597/1‑149 (MQ=255) gCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATgcgg < 3:197860/149‑1 (MQ=39) cACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATgcggc < 6:94801/149‑1 (MQ=39) gTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGccc > 1:178767/1‑149 (MQ=39) cAGCTGATCTGCTCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGt < 2:178767/149‑1 (MQ=38) cTGATCTGCGCTGCTCCATTGAAAGGGTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTTCATTGATCGGG‑CCGGCCT‑C‑TTCGCGGGTAAACCCGCTCCTACCAGGGA‑ccgtg < 5:119285/117‑5 (MQ=37) atGATATGAGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑ACGGCCT‑CTTCGAG‑GGTAAACCCGCTCATACCAGGGA‑ccgtg > 6:119285/2‑113 (MQ=255) | GCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGG‑CCGGCCT‑C‑TCTGC‑GGTAAACCCGCTCCTACCAGGGA‑CGTGCCGGCCTTGAATGCGGCGCTGCCCCTGGT > NC_002947/4585887‑4586089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |