New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1906682 =	55 (0.750)	8 (0.130)	7/226	7.9	16.7%	intergenic (+22/+106)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1906776 =	35 (0.580)					intergenic (+116/+12)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAGCGCCGCTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACAT  >  NC_002947/1906535‑1906828                                                                                                                                                    |                                                                                                                                                    gCAGCGCCGGTCTACAAGCAGCAGTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGCTGGCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCgg                                                                                                                                                    <  5:200311/149‑1 (MQ=255) gCAGCGCCGCTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCAGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCg                                                                                                                                                     <  2:237648/148‑1 (MQ=255)      gccgcTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCctct                                                                                                                                               >  5:326072/1‑149 (MQ=255)                             gCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACg                                                                                                                        <  6:326072/149‑1 (MQ=255)                                 gctgAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGaa                                                                                                                     >  3:255858/1‑148 (MQ=255)                                 gctgAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAAt                                                                                                                    <  3:289039/149‑1 (MQ=255)                                          ggAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGc                                                                                                           >  3:114148/1‑149 (MQ=255)                                           gAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGcc                                                                                                          >  6:207552/1‑149 (MQ=255)                                             gtggCTGGAGGATGCCGGGCAGCGGTTGCGGGTGTGGCCTGTGCGGGTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCtt                                                                                                        <  1:306637/149‑1 (MQ=255)                                              tgtCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTg                                                                                                       <  5:92939/149‑1 (MQ=255)                                                tCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGt                                                                                                      >  6:372564/1‑148 (MQ=255)                                                 cTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTaa                                                                                                    >  4:193433/1‑149 (MQ=255)                                                      ggaTGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACgg                                                                                               >  7:102813/1‑149 (MQ=255)                                                       gaTGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATATGCACCGCCTTGTAATACGgc                                                                                              >  7:54113/1‑149 (MQ=255)                                                           ccGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑Gcc                                                                                          <  3:193433/148‑1 (MQ=255)                                                           ccGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑Gcc                                                                                          <  1:27236/148‑1 (MQ=255)                                                            cGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCCAGCCCCCGCCTACGGCATCAGGCCCGGCGTGTAATACGGG‑GCCgc                                                                                        >  3:342580/1‑148 (MQ=255)                                                                     gTTGCTGGTGTGGCCGGTGCGGGTGCAGGGGGTGGCGGGGGAGCTGGCGGTGGCCTGATACGCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGccc                                                                                                                                 <  7:327704/100‑1 (MQ=37)                                                                     gTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTgg                                                                                <  7:227112/148‑1 (MQ=255)                                                                     gTTGCGGGAGTGGCCGGTGCGGTTCAAGGGGGAGGCGGTCGAGCTGGCGGAGGCCTGATACCCCTTTGCTGCATGTGCCGGCCTCGTCGCCGGCAAGcac                                                                                                                                 >  8:327704/1‑98 (MQ=255)                                                                          ggggGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCgg                                                                          <  6:160460/149‑1 (MQ=255)                                                                          gggTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTAGCGGGCCAGGCCCCTACGACGGAAACAGCACCCCCGTGTAATACCGC‑GCCCCCCCGGTGGGAGccg                                                                          >  1:164038/1‑147 (MQ=255)                                                                              gtgGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCtt                                                                      <  6:258551/149‑1 (MQ=255)                                                                              ggggCCGGTGCGGGTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCtt                                                                      <  7:169762/147‑1 (MQ=255)                                                                                ggCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTgg                                                                                <  4:182540/137‑1 (MQ=255)                                                                                ggCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTgg                                                                                >  3:182540/1‑137 (MQ=255)                                                                                 gCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGcc                                                                   <  5:372564/149‑1 (MQ=255)                                                                                 gCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGc                                                                    <  2:325994/148‑1 (MQ=255)                                                                                 gCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGc                                                                    >  1:325994/1‑148 (MQ=255)                                                                                  ccGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGccc                                                                  <  4:255858/149‑1 (MQ=255)                                                                                   cGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCGTGTAATACCGC‑GCCGACCCAGTGGGAGCGGGCTTGCCcg                                                                 >  8:102319/1‑149 (MQ=255)                                                                                   cGGTGCGCTTGAAGGCGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCGTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCcg                                                                 <  3:203572/149‑1 (MQ=255)                                                                                        cGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTATTCGCGGGCAAACCCCCGACAAAGGCATCAGCGACTCCAAGTAATACGGC‑GCCGACCCCGTGGGCGCGGGCTTTCCggcc                                                               >  2:238385/1‑145 (MQ=255)                                                                                         ggTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGc                                                                    <  2:425930/140‑1 (MQ=255)                                                                                         ggTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGc                                                                    >  1:425930/1‑140 (MQ=255)                                                                                          gTTGCAGGGGGAGGCGGGGGAGCGGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAagag                                                          <  4:315375/149‑1 (MQ=255)                                                                                                gggggAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCCCTCCGACGGAATCTGCACCGCCGTGTAATACGGC‑GCCGACCCGGTGGGAGCGGGCTTGGCCGCGCAGAGGCCAg                                                     >  1:232649/1‑148 (MQ=39)                                                                                                               gCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTg                                                                                                                 <  8:347559/74‑1 (MQ=255)                                                                                                               gCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTg                                                                                                                 >  7:347559/1‑74 (MQ=255)                                                                                                                ggggCGGTGGCGTGAAACCCCTTTGCTGCCTGTGCCGCCCTCTTCGCGGCCACGCCCGCTCCAACGGACTCTCCCCCGCCTTTAAATAGGGC‑GCCGCCCCGGTGGGCGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATa                                    <  4:342580/147‑1 (MQ=255)                                                                                                                   gCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGCCTAGATaac                                  >  7:391721/1‑148 (MQ=255)                                                                                                                        ggCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCAGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAAccc                            >  5:345998/1‑149 (MQ=255)                                                                                                                         gCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAAcccc                           >  2:275556/1‑149 (MQ=255)                                                                                                                           cTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTCTAATACGGC‑GCCGACCCTGTgg                                                                                <  7:275284/94‑1 (MQ=255)                                                                                                                           cTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCCTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTg                         >  5:412801/1‑149 (MQ=255)                                                                                                                              taaCCCTTTTGCTGCGTGGGCGGGCGTGTTGGCGGGAACGCCGGCGCCTAC‑TAAACCGCACCCGCTTTTAAATCGGCGGCACACCCGGGGGTGGGGGTGTGGCCCGGTAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTgcg                       <  6:269429/146‑1 (MQ=255)                                                                                                                               tACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCGCCTACGGAATCTGCCCCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTgcggc                     <  3:149905/149‑1 (MQ=255)                                                                                                                                  cccTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGc                                                                        >  4:84850/1‑95 (MQ=255)                                                                                                                                  cccTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATATGCACCGCCTTGTAATAAGGG‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGCGGCCCGCACAAGCCGACGAGATAACCCACCCCGGCGGCGTg                  >  8:316680/1‑149 (MQ=37)                                                                                                                                  cccTTTGCTGCCTGTGCCGGCCTCTTCGCGGCCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGc                                                                        <  3:84850/95‑1 (MQ=255)                                                                                                                                        gctgcCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGccc             <  5:207552/148‑1 (MQ=255)                                                                                                                                           gcCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCGTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATa                                    <  1:349174/122‑1 (MQ=255)                                                                                                                                             cTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCATAGGTAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCaaa       <  4:114148/149‑1 (MQ=255)                                                                                                                                                  ccGGCCTCTTCGCGGGCAAGCCCGCTACTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGCCCCTGTGGGAGCGGGCTTGCCCGCGAAGCGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACAt  >  2:357882/1‑149 (MQ=255)                                                                                                                                                   cGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCCCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATaaccaaa                              >  2:364733/1‑119 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCAGCGCCGCTCTACAAGCAGCACTTCAGCCTGCTGAGTGGGGAGTGTCTGGAGGATGCCGGGCAGAGGTTGCGGGTGTGGCCGGTGCGGTTGAAGGGGGAGGCGGTGGAGCTGGCGGTGGCCTGATACCCCTTTGCTGCCTGTGCCGGCCTCTTCGCGGGCAAGCCCGCTCCTACGGAATCTGCACCGCCTTGTAATACGGC‑GCCGACCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACAT  >  NC_002947/1906535‑1906828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.