New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2472140	48 (0.650)	5 (0.090)	5/200	8.1	13.2%	intergenic (+44/+105)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	= 2472186	31 (0.580)					intergenic (+90/+59)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACA  >  NC_002947/2472040‑2472333                                                                                                                                                    |                                                                                                                                                     aaTGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGgtg                                                                                                                                                     >  6:144368/1‑148 (MQ=255)  aTGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGgtg                                                                                                                                                     >  7:47699/1‑147 (MQ=255)   tGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAg                                                                                                                                                  <  8:47699/149‑1 (MQ=255)         cAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCgg                                                                                                                                            <  3:189582/149‑1 (MQ=255)         cAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCgg                                                                                                                                            >  4:189582/1‑149 (MQ=255)          aaCCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCggg                                                                                                                                           <  5:356191/149‑1 (MQ=255)           aCCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGt                                                                                                                                          <  4:711/149‑1 (MQ=255)            gcgcgAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGt                                                                                                                                          <  1:78374/147‑1 (MQ=255)                  aGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCcg                                                                                                                                   <  5:144368/149‑1 (MQ=255)                     cTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACTCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGa                                                                                                                                <  6:4677/149‑1 (MQ=255)                                      aTGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGGCCAAACACCA‑ATGTGTGTCCACCCCCAAACAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGcg                                                                                                               >  1:358952/1‑148 (MQ=255)                                                       tGATCTATAGCCTGTGCCGGCCACTTAGCGGGTAAAACCCCGCCAACCACCGCCAGCGCCCCAAAACCC‑AAGTGTGTGCACCCCCCAACAGGTGTATGGGCGGGGTTTACCGCCAACAGGCCCGGACAGGCGGGTaaaaagatggaa                                                                                                >  2:261339/1‑140 (MQ=255)                                                                          gCCTCTTCGCGGGAAAACCCGCCCCACCGACGCCCTGCGCCCAAACACCA‑ATGTGTGCCCACCCCCAATCCGGTGAAGGCGCGGGTTAACCCGCTAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTaa                                                                          <  1:261339/149‑1 (MQ=255)                                                                                 cgcgGGTAAACCCGCTCCTACGACGCCCTGCTCCCAAACTCCA‑TTGTGTGTCCACCCCCAATCCGGTGTAGTAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAActct                                                                     <  1:107756/147‑1 (MQ=37)                                                                                  ggggtaaaaCCGGGTCGTAGGACGGCCTGCCCCCAACAACCA‑ATGTGTGTCCACCCCCAATCCGGTGTCGGCGGGGGTTTACCCGCTAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTa                                                                  <  2:358952/143‑1 (MQ=255)                                                                                  gcgGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGACGGCACAGGC‑TGTAAAAACTCTGAATCGCACTACGCCCGGGTTTTAAACTCTg                                                                    >  7:358075/1‑147 (MQ=255)                                                                                          aCCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGGTTTTAAACTCTGTAGCCTCAcc                                                          >  8:399334/1‑149 (MQ=255)                                                                                           cccGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAccc                                                         >  6:72950/1‑149 (MQ=255)                                                                                            ccGCTCCTTCGACGGCCTGCGCCCAAACAGCT‑TTGTGTGTCCACCCCCTATCAGTTGTAGGAGCGGGTTTACCCGCGATGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAcccc                                                        <  4:226716/149‑1 (MQ=37)                                                                                            ccGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAccca                                                        >  3:226716/1‑148 (MQ=255)                                                                                                  cTACGACTGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTa                                                                                                           <  2:6023/92‑1 (MQ=255)                                                                                                  cTACGACGGCCTGCGCCCAAACACCAGATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTa                                                                                                           >  1:6023/1‑93 (MQ=255)                                                                                                    acgacgGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGc                                                 >  6:3664/1‑148 (MQ=255)                                                                                                    acgacgGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCa                                                >  4:322789/1‑149 (MQ=255)                                                                                                    acgacgGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCa                                                >  1:114199/1‑149 (MQ=255)                                                                                                     cgacgGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCAt                                               >  8:44018/1‑149 (MQ=255)                                                                                                       acgGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCCCTACGCCCGGTTTTTAAACTCTGTAGCCTCCCCACCGCCAGCATc                                              >  8:164414/1‑148 (MQ=255)                                                                                                          gCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGc                                          <  2:114199/149‑1 (MQ=255)                                                                                                           ccTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCt                                         >  4:412114/1‑149 (MQ=255)                                                                                                           ccTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCt                                         <  5:3664/149‑1 (MQ=255)                                                                                                           ccTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCt                                         >  7:24647/1‑149 (MQ=255)                                                                                                            cTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTg                                        >  4:240088/1‑149 (MQ=255)                                                                                                                          cA‑ATGTCTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACACCCGCCAGCATCCAGCTGGTACACCCGCgccg                          >  2:60124/1‑149 (MQ=255)                                                                                                                                 gtgtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGgccgcc                    >  3:243483/1‑149 (MQ=255)                                                                                                                                  ttcccccccccAATCCGGTTTCGGCGCGGGTTTCCCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGgccgcc                    <  8:358075/142‑1 (MQ=255)                                                                                                                                  tgtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGccc                   <  3:240088/149‑1 (MQ=255)                                                                                                                                   gtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGcccc                  >  5:167208/1‑149 (MQ=255)                                                                                                                                    tCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCt                 >  5:344151/1‑149 (MQ=255)                                                                                                                                      cACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTg                <  4:243483/148‑1 (MQ=255)                                                                                                                                       aCCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGtt              >  3:216743/1‑149 (MQ=255)                                                                                                                                                 aGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaaaaaa    <  7:164414/149‑1 (MQ=255)                                                                                                                                                   gtgtAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGACCGCCCCTGTTCATCAAAAAaca  >  2:108409/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCA‑ATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC‑TGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACA  >  NC_002947/2472040‑2472333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.