| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,126,647 | +C | intergenic (‑101/+48) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,126,645 | 1 | . | C | 81.8% | 118.7 / 23.8 | 44 | intergenic (‑99/+50) | tdcG‑II/gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base . (8/0); new base C (18/18); total (26/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.37e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTAC > NC_002947/1126500‑1126788 | gAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAA‑cc < 2:224428/148‑1 (MQ=255)gAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAACCGCGAATTAGGAGGTATATCCACCAAAGCATTAG‑C‑GG‑G‑T‑aaaacc > 6:121598/1‑146 (MQ=255) ccgatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTAcaca < 5:121598/148‑1 (MQ=255) cgatCTTGAACAGGGCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAA‑cccgctc < 5:84293/140‑6 (MQ=255) tCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCGCGAATGCGGAGGTATAGCCCCCCTCGCATTAG‑C‑GG‑G‑T‑AAACCCGCGGCTACACCGAGcc > 2:76595/1‑149 (MQ=255) gAAGACGCTCAGGGAAATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCACATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGcc < 8:310642/149‑1 (MQ=38) aGACGCTCCGTGACATGTGGCCCTCCTGCCCGGTTGTTGGGTGGACATTGCGCCCGGTAGGCGCGGGTTTCCCCGCGAAGGCGGAGGTATAGCCCCCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGc < 6:360516/146‑1 (MQ=37) aGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCGCGAAATCGGAGGGTTAGGCCCCATCGCATTAG‑CGGG‑G‑A‑AAA‑CCGCGCCATCACAGAGCCCCCCCCCCCACCCACGTgggggg > 5:133468/1‑149 (MQ=255) gACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGGTTTCCCGCCCAAGACGAGGGATTGCCCCCATACCCATAG‑C‑GGCG‑T‑AAC‑CCGCAGCGAGACCCTGCCCGCCCCCCAACCCACGTGGGGGGGAg > 6:174273/1‑149 (MQ=255) aCATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCGCGAATGCGGTGGTTTATCCACCATCGCATTAG‑C‑GG‑GTT‑AAC‑CCGCGCCGACACAAAGCCCGCCACCCAAGCCCGGGGGGGGGGAgg > 5:143243/1‑149 (MQ=255) tgtgGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCGCGAAATCGGAGGTTTATCCACCAAAGCCTTAG‑C‑GG‑G‑TAAAA‑CCGCACCGAAACAGAGCCCCCCACCCCAGCCCCGTGGGGGGGAGGGc > 7:352219/1‑148 (MQ=255) tGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCCCGAATGCGGAGGTATAGCCAACATAGCATTCGCC‑GG‑G‑A‑AAC‑CCGCTCCTACACACAGCCAGCCACCCACGCCACGTGTGGGGGGGGGCGAGACGGCGTcc > 5:277405/1‑149 (MQ=255) tGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAACCCCGAATGCGGAGGTATAGCCACCATCGCATTAG‑C‑GG‑G‑T‑AAACCCGCTCCGACACAGAGCCCGCCACCCAACCCAGGTGGGGGGGAGGGCAATAAGGCGTcc > 7:203347/1‑149 (MQ=255) ccAGGTTGTTGGGTGGACTTTGCGCCCTGTAGGGGCGGGTTTACCGGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCt < 6:277405/148‑1 (MQ=38) ccAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTcc < 6:387916/147‑1 (MQ=255) ttgGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGctc < 8:352219/148‑1 (MQ=255) gTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCCCGAAATGGGAGGTATTGGCACCATAGCATTAG‑C‑GG‑GTT‑AAA‑CCGCTCCTAAACAGAGCCCCCCACCCAAGCCAGGTGGCGGGGAGGGCTATAAGGCGGACGGATATCTCtgga > 6:151893/1‑148 (MQ=255) ggACATTGAGCCCTGTAGGCGCGGGGTTACACCCCCAAGGGGAGGGAAACCCCCCCTAGCAATAG‑C‑GG‑G‑G‑AAACCCCCTCCCACACCAAGCCCCCCACCCCAGCCCGGGGGCCGGGCGGGGTTTCAAGCGGCCGGATAGCTCtgcatcg > 6:107528/1‑149 (MQ=255) aCATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGAc < 1:76595/149‑1 (MQ=255) aGCCCTGTAGGCGCGGGTTTTACCGCGAATGCGGAGGTATAGCCACCATCGCATTAG‑C‑GG‑G‑TAAAA‑CCGCTCCAACACAGAGCCCGCCACCCAACCCAGGTGGGGGGGAGGGCTATCAGGCGTCCTGATAGCAATCGATCGACGGGCAg > 6:296604/1‑149 (MQ=255) cgcgGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAg > 1:294742/1‑149 (MQ=255) cgcgGGGTTACCCGCGAATGCGGCGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAg < 5:298996/149‑1 (MQ=255) tttACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCg < 5:168262/149‑1 (MQ=255) tttACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCg < 2:294742/149‑1 (MQ=255) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGTGTCCTGATAGCTCTCGATCGACggg < 8:151284/124‑1 (MQ=255) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGTGTCCTGATAGCTCTCGATCGACggg > 7:151284/1‑124 (MQ=255) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGc > 6:352987/1‑149 (MQ=255) ccGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGc > 6:313986/1‑149 (MQ=255) gcgAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGcc > 8:338837/1‑148 (MQ=255) gcgAATGCGGAGGTATAGCCACCATCGCAATCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCgac > 8:147255/1‑146 (MQ=255) gCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAac < 3:3479/146‑1 (MQ=255) gCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAac > 4:3479/1‑146 (MQ=255) ggAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGtt > 7:152313/1‑149 (MQ=255) ggAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGtt < 8:152313/149‑1 (MQ=255) gAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTg < 5:313986/149‑1 (MQ=255) ataGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAAAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGAc > 6:163039/1‑149 (MQ=255) aGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGAccc > 4:6891/1‑149 (MQ=255) tCGCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGAcc < 7:326141/149‑1 (MQ=255) gCATTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcg < 5:107528/148‑1 (MQ=255) aTTCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcggcg > 6:161545/1‑149 (MQ=255) aTTAG‑C‑GG‑G‑TAAAA‑CCGCTCCTACACAGAGCCCGACACCCGAGCCACGTGGCGGCGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACccgcg > 7:184922/1‑149 (MQ=255) ttCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcggcg < 2:28412/148‑1 (MQ=255) ttCG‑C‑GG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcggcg > 1:28412/1‑148 (MQ=255) g‑c‑gG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGAccc < 1:68911/133‑1 (MQ=255) g‑c‑gG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGAccc > 2:68911/1‑133 (MQ=255) g‑c‑gG‑G‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCggcggc > 4:305606/1‑147 (MQ=255) g‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCACGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTAc > 7:82280/1‑149 (MQ=255) | GAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCG‑C‑GG‑G‑T‑AAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTAC > NC_002947/1126500‑1126788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |