Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,419,549	+C	intergenic (‑38/+98)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,419,548	1	.	C	100.0%	131.4 / NA	40	intergenic (‑37/+99)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (19/21);  total (19/21)

CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATC  >  NC_002947/1419400‑1419689                                                                                                                                                      |                                                                                                                                              ccTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg                                                                                                                                                >  8:204454/1‑149 (MQ=255)  cTGGCAGGTGATGGGGGGTTCGATTGGGAACTGCGGGTGAGTGTTGTTTTCGCTTTGGTAGAAGCAGGTATTGCCGACTGTGGTGGGTTCTGTTGTGTTGTGGGTGGGCTTTGTTTTGTTTCCCTGGATTGTGGGTTGCCTGggctgg‑c                                                                                                                                              <  8:258055/149‑1 (MQ=255)  cTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑c                                                                                                                                              <  2:228594/149‑1 (MQ=255)       aGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑cctctt                                                                                                                                         <  2:108470/149‑6 (MQ=255)       aGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑cctctt                                                                                                                                         <  2:113463/149‑6 (MQ=255)       aGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTAGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGCTGGGGAGTGTTTTGTTTACCTGGATTCTGGGTTGCAGGggctgg‑cctctt                                                                                                                                         >  6:388400/1‑144 (MQ=255)              gCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCggg                                                                                                                                    >  7:85051/1‑148 (MQ=255)               ccGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGc                                                                                                                                   <  2:64449/148‑1 (MQ=255)                cGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCAc                                                                                                                                 >  4:155353/1‑149 (MQ=255)                       gATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCt                                                                                                                          >  6:114430/1‑149 (MQ=255)                         tGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTcc                                                                                                                        >  7:292737/1‑149 (MQ=255)                              aaCAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGGTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                                                                                                   <  2:190928/149‑1 (MQ=255)                                       tGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACtgtg                                                                                                           >  3:5972/1‑148 (MQ=255)                                         aGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAg                                                                                                        <  6:188076/149‑1 (MQ=255)                                               gttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGt                                                                                                   <  6:48889/148‑1 (MQ=255)                                                   tCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGCCgg                                                                                              >  1:75755/1‑149 (MQ=255)                                                    cgcgTTGGTAGAAGCAGGTCTTTCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTAGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACgg                                                                                              <  7:273880/148‑1 (MQ=39)                                                      ccTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtg                                                                                           <  4:5972/149‑1 (MQ=255)                                                        ttGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGGACGCCCGCCCCCCCAGGTTCGGTGCAGTTCGTGACgggggtg                                                                                         >  3:361488/1‑144 (MQ=255)                                                            tAGAAGCAGTGGTTGCCGACTGGTGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGTGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTTCGTGACGGCTGTGGTGa                                                                                     <  5:388400/149‑1 (MQ=38)                                                                        ttGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                         >  6:83668/1‑133 (MQ=255)                                                                        ttGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                         <  5:83668/133‑1 (MQ=255)                                                                           ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCgg                                                                       <  8:292737/148‑1 (MQ=255)                                                                            cGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                                     <  3:155353/149‑1 (MQ=255)                                                                               cTGGGGTGGGTGCTGTTGTGTTGTCGGTGGGCAGTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGGGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTg                                                                  <  8:296479/149‑1 (MQ=38)                                                                                    gtggGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCACTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCcgc                                                             <  1:127832/149‑1 (MQ=255)                                                                                    gtggGTTCTATTGTGTTCTCGGTGGGCATTGTTTTGTTTCAATGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGCTAATGTTCAGTGCGTTACGCCTGTGGTGACCATGTGTGAACGGGCGAGCCcgc                                                             >  8:288892/1‑149 (MQ=37)                                                                                       tctgcTGTTGCGTTGGCTGTTGGCATCGTTTTGTTGCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACAGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGa                                                           <  8:343437/144‑1 (MQ=25)                                                                                         ttCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGaa                                                          >  1:264339/1‑147 (MQ=255)                                                                                            tgttgtgttgTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                                     <  7:59753/133‑1 (MQ=255)                                                                                            tgttgtgttgTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                                     >  8:59753/1‑133 (MQ=255)                                                                                            tgttgtgttgTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGc                                                     >  7:37610/1‑149 (MQ=255)                                                                                                gtgttgtCGGTGGGCTTTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                         <  6:361843/109‑1 (MQ=255)                                                                                                gtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                         >  5:361843/1‑109 (MQ=255)                                                                                                     gtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGAcc                                                                                   <  2:2254/110‑1 (MQ=255)                                                                                                     gtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTCTGCAGTGCGTGACGGCTGTGGTGAcc                                                                                   >  1:2254/1‑110 (MQ=255)                                                                                                          ggggCATTGTTTTGTTTCCCTGGATGCGGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGGGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCTGACCTGCTAATg                                       <  7:204454/148‑1 (MQ=25)                                                                                                            ggCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCa                                     <  5:114430/149‑1 (MQ=255)                                                                                                                   ttttgtttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGtgtg                              >  7:294166/1‑149 (MQ=255)                                                                                                                   ttttgtttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCCCGGGCACCCCCCCAACCACCTGATCATTGCAATGCGTGAACGCAGTTGTTAACCAGTGGGAAACGGCGTTCCCCCGAAAAAGCCATACCAGCAAAATCAAAgtgt                               >  2:284503/1‑148 (MQ=255)                                                                                                                     ttgtttCCCTGGATTGTGGGTTGCCTGGGGTGGCCTCTGCGCGGGCACGCCCGCTCCCACTGGTAGTGGGCAGTGCGTGACGGGGGTGGTGACCCTGTGGTTGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGa                             <  8:37610/148‑1 (MQ=37)                                                                                                                     ttgtttCCCTGGATTCTGTGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTTACGGCTGTGGTGACCCTGTGGGTGCGGGGGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGa                             <  7:288892/148‑1 (MQ=37)                                                                                                                     tggtttCCCTGGATGCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCCCAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGa                             <  1:256641/146‑1 (MQ=255)                                                                                                                             cTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgtg                    >  2:63353/1‑149 (MQ=255)                                                                                                                                  ttCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGGAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTa                >  1:81569/1‑148 (MQ=255)                                                                                                                                               gggCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGGCCGCGAAGAGGCCTGACCTGCGAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATc  >  2:275780/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                              CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATC  >  NC_002947/1419400‑1419689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑