New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808174 =	3 (0.050)	24 (0.480)	19/214	2.5	55.0%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	37 (0.740)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAAC  >  NC_002947/4808032‑4808318                                                                                                                                               |                                                                                                                                                  gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCc‑gcg                                                                                                                                             <  8:250158‑M1/6‑1 (MQ=255)   ttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAg                                                                                                                                          <  5:202330‑M1/9‑1 (MQ=255)    gCAATGGGCGGATTTCGCGCTCTGGGGGGTAGGGGTTTGGCGGGTGGTTATCAGAGCCTGGGTGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCc‑gcgcggc                                                                                                                                         <  7:212114/149‑5 (MQ=37)     gtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAgcg                                                                                                                                        <  4:105814‑M1/11‑1 (MQ=255)        tcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaccacggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAGcgcc                                                                                                                                      >  7:211376‑M1/136‑148 (MQ=255)            gccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCcgcgcg                                                                                                                                 <  1:2482‑M1/18‑1 (MQ=255)             ccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCgcgg                                                                                                                                <  8:185757‑M1/19‑1 (MQ=255)                  tCGCGCGTTGTCGTGCAGGCGTTTGGCCGGAGGCTCTCAGCGCCTGGGAGGCGTTCGCCGGGTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCC‑GCGCGGCGCTTCgcgggtaaa                                                                                                                           <  3:193754/149‑5 (MQ=21)                   cgcgCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGACTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCC‑GCGCGGCGCTTCgcgggtaaa                                                                                                                           <  5:156368/148‑5 (MQ=37)                        tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCCGCGAAGCGCCGCCCGCGCGgcgc                                                                                                                         >  1:199883‑M1/120‑146 (MQ=255)                        tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCCCGCGCGgcgc                                                                                                                         <  2:199883‑M1/26‑1 (MQ=255)                            ggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGAtct                                                                                                                  <  3:273493‑M1/33‑1 (MQ=255)                             gacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTca                                                                                                                <  7:92700‑M1/35‑1 (MQ=255)                                gcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGAtctc                                                                                                                 >  5:4840‑M1/112‑145 (MQ=255)                                gcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGAtctc                                                                                                                 <  6:4840‑M1/34‑1 (MQ=255)                                  gcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCgcgg                                                                                                                                <  5:191075‑M1/19‑1 (MQ=255)                                  gcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCgcgg                                                                                                                                >  6:191075‑M1/110‑128 (MQ=255)                                     gcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCt                                                                                                        <  3:51766‑M1/43‑1 (MQ=255)                                              ccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAAtcct                                                                                               <  4:128676‑M1/52‑1 (MQ=255)                                                            tcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggaggggctggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCt                                                                                  <  1:100929‑M1/65‑1 (MQ=255)                                                            tcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCt                                                                                  <  5:48471‑M1/65‑1 (MQ=255)                                                                          tacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGcc                                                                   <  7:303925‑M1/80‑1 (MQ=255)                                                                              aacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTcc                                                               <  5:256030‑M1/84‑1 (MQ=255)                                                                                  cgcgcgccgcccgcgactggtccaggcggcactgcccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTc                                                           >  8:62400‑M1/62‑149 (MQ=255)                                                                                      ggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCaaaa                                                       <  8:308025‑M1/92‑1 (MQ=255)                                                                                        tcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAAtt                                                     >  6:256030‑M1/56‑149 (MQ=255)                                                                                            gcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCaa                                                 <  3:76894‑M1/98‑1 (MQ=255)                                                                                                gactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgcc                                             <  1:96883‑M1/102‑1 (MQ=255)                                                                                                  ctggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgccgc                                           >  6:100678‑M1/46‑149 (MQ=255)                                                                                                     gtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACgccgcc                                          >  6:48471‑M1/43‑147 (MQ=255)                                                                                                      tgcaggagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGccccc                                       >  3:128676‑M1/42‑149 (MQ=255)                                                                                                           gagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAc                                                <  8:332032‑M1/99‑1 (MQ=255)                                                                                                           gagggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAc                                                >  7:332032‑M1/37‑135 (MQ=255)                                                                                                              ggactggccgaaacaaacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAAt                                <  8:92509‑M1/115‑1 (MQ=255)                                                                                                                             aacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTccc                >  2:96883‑M1/19‑149 (MQ=255)                                                                                                                             aacgtaggagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTccc                <  4:173651‑M1/131‑1 (MQ=255)                                                                                                                                    gagcgggtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCCCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTACACCGCCGCCTCCCCGCGaa          <  8:269908‑M1/137‑1 (MQ=255)                                                                                                                                          gtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCTCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa   >  8:303925‑M1/6‑149 (MQ=255)                                                                                                                                          gtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa   >  2:100929‑M1/6‑149 (MQ=255)                                                                                                                                          gtttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa   >  4:76894‑M1/6‑149 (MQ=255)                                                                                                                                            ttaCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaac  <  3:290008‑M1/145‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                  AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCC‑GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAAC  >  NC_002947/4808032‑4808318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.