| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,461,502 | Δ1 bp | 5.1% | intergenic (+17/‑11) | PP_3954 → / → PP_3955 | substrate‑binding protein/permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,461,502 | 0 | T | . | 5.1% | 251.2 / 5.4 | 79 | intergenic (+17/‑11) | PP_3954/PP_3955 | substrate‑binding protein/permease |
| Reads supporting (aligned to +/- strand): ref base T (40/33); new base . (2/2); total (44/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCTTCCACGCCTGGTCACGGCCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCGTGC > NC_002947/4461355‑4461649 | aCCTTCCACGCCTGGTCACGGTCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATg < 8:41391/149‑1 (MQ=255) cTTCCACGCCTGGTCACGGCCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATg > 3:199152/1‑147 (MQ=255) cACGCCTGGTCACGGCCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCCTCCAGGTGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGagcag > 3:236115/1‑149 (MQ=255) aCGCCTGGTCACGGCCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGGGCAGCGAGGTACTTCAAGGAGCAAAACCTGGTCCCCTGAGGACGTTCCTGAGCCATGGagcagc > 8:314898/1‑149 (MQ=255) aCGCCTGGTCACGGCCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGagcagc < 6:188282/149‑1 (MQ=255) cTGGTCACGGCCCACGCTTCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCCTAt < 3:329739/149‑1 (MQ=255) cTGGTCACGGCCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGTCATGGAGCGGCGTAt < 2:8639/149‑1 (MQ=255) cTGGTCACGGCCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGCGCAGCGTAt > 7:71358/1‑149 (MQ=255) aCGGCCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGa > 4:165259/1‑149 (MQ=255) gCCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGTCCTGGAGCAGCGTATGAGTGATAc < 7:55334/149‑1 (MQ=255) cccACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATAcc > 3:285781/1‑149 (MQ=255) ccACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACcg > 2:334301/1‑149 (MQ=255) cACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACcgc < 4:285781/149‑1 (MQ=255) tGCAGCGAAAGAGATGCAGCGAGAAATTGGCGCCAAGAACCTGGCGAATCCGCTGCATCCAGGAGCAGCGAGGTACTTCAACGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAg < 4:119628/149‑1 (MQ=255) atatCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGc > 2:162242/1‑148 (MQ=255) tCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTTCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAg < 7:236727/148‑1 (MQ=255) ggCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCAcc > 4:326681/1‑148 (MQ=255) cAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGa < 7:61795/114‑1 (MQ=255) cAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGa > 8:61795/1‑114 (MQ=255) cAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGAt > 8:287817/1‑149 (MQ=255) aaaaTGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCA‑GGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCt > 3:316778/1‑149 (MQ=255) aaaaTGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCA‑GGAGCAGCGTATGAGTGATACAGAGCAAGGTCTTCACGCCAGAACCGATCGCt > 3:322176/1‑149 (MQ=255) aaTGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTg < 5:167164/149‑1 (MQ=255) aGAAGCTGCCCATTCCGCTTCATCCAGGAGCAGCGAGGTACTTCAATGAGAAAAACCTGCTCCCCTGATGACATTCATGAGCCA‑GGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCgcgc < 4:316778/149‑1 (MQ=255) aGAACCTGTCCATTCCGCTTCATACAGGAGCAGCGAGGTACTTCAATGAGAAAAACCTGCTCCCCTGATGACATTCATGAGCCA‑GGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCgcgc < 4:322176/149‑1 (MQ=255) gAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCAGGGAGCAGCGTATGAGTGATACCGCGCAAGGTCGTCACGCCAGCACCGATCGCGGGCCGGCCtcgc > 4:231805/1‑149 (MQ=255) aCCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGTTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCtt > 6:219640/1‑149 (MQ=255) ccTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCttt > 3:352281/1‑149 (MQ=255) cccATTCCGCTTCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAATGTCTTCACGCCAACACCCATCGCTGGCCTTCCGCGCtttttt > 4:263410/1‑147 (MQ=255) cccATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTg < 4:199152/148‑1 (MQ=255) ccATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGcc > 3:81865/1‑149 (MQ=255) aTTCCGCTGCATCCAGGAGCAGCGAGGTACTTCATGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGt < 3:264291/149‑1 (MQ=255) gCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCAt > 2:28712/1‑149 (MQ=255) cTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCAtt < 3:96920/149‑1 (MQ=255) cATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTg < 4:81865/147‑1 (MQ=255) aTCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTc > 6:35497/1‑149 (MQ=255) tCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCt > 7:226003/1‑149 (MQ=255) aGGAGCAGCGAGGTTCTTCTAGGATAAAAAGCTGCTCCCCTGATGACATTCCTGTGCCATGGAGCTGCGTATGAGTGATACCGCGCAAGGTCTTCACGGCAGCACCGTTCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGTTCtttt < 3:231805/149‑1 (MQ=255) aGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCttt > 2:366027/1‑148 (MQ=255) gAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCg > 2:286992/1‑149 (MQ=255) agcagcGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCgg < 7:287817/149‑1 (MQ=255) gcagcGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGt > 8:105534/1‑149 (MQ=255) gcGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGtttt > 1:221722/1‑149 (MQ=255) cGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTc < 4:236115/149‑1 (MQ=255) aGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCa < 3:165259/149‑1 (MQ=255) ttCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCa > 2:189896/1‑143 (MQ=255) ttCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCa < 1:189896/143‑1 (MQ=255) aaGGAGAAAAACCTGCTCCCCTGATGACATACCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCAc > 1:33796/1‑149 (MQ=255) ggAGAAAAACCTGCTCCCCTGATGACATACCTGAGCCAAGGAGCAGCGAATGAGTCATACCGCGCAAGGTCTTCACGACACCACCCATCCCAGCCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCAcgg > 7:231934/1‑149 (MQ=255) agaAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCAcggcg < 4:352281/149‑1 (MQ=255) gaAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCAcggcgg > 1:230966/1‑149 (MQ=255) ataaagatGCTCCCATTATGACATTCCTGAGCCATGGAGCAGGGTATGAGTGTTAGCGGGGAAGGTCTTCACGCCATCACGGATGGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCAcggcgg < 3:263410/141‑1 (MQ=255) aaaaaCCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACggtggc > 1:114272/1‑149 (MQ=255) ccTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTcc < 2:221722/149‑1 (MQ=255) cTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTccc > 5:233137/1‑149 (MQ=255) cTCCCCTGCTGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGGGGCATTGGGCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCt < 7:314898/149‑1 (MQ=255) cTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTcccc < 6:272341/147‑1 (MQ=255) cccTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGAt < 1:334301/149‑1 (MQ=255) cccTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGAt > 2:111883/1‑149 (MQ=255) cccTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGAt > 7:160547/1‑149 (MQ=255) cTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGAttt > 3:291351/1‑149 (MQ=255) tgatgaCATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCt > 2:291042/1‑136 (MQ=255) tgatgaCATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCt < 1:291042/136‑1 (MQ=255) tgatgaCATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTc > 6:151864/1‑149 (MQ=255) gatgaCATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGt < 2:217079/94‑1 (MQ=255) gatgaCATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGt > 1:217079/1‑94 (MQ=255) tgaCATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCAc < 2:33796/149‑1 (MQ=255) aCATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCAccc < 2:230966/149‑1 (MQ=255) aTTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGTTTTTACATATCGCCACGGCGGCCTTCCCCCTGATTTCCAccc > 8:147666/1‑147 (MQ=255) tGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCAAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACt > 7:111803/1‑149 (MQ=255) gCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCg < 8:226003/149‑1 (MQ=255) ccATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCGt > 6:248169/1‑149 (MQ=255) ccATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCGt < 5:35497/149‑1 (MQ=255) cATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTTGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCGTg < 1:111883/149‑1 (MQ=255) aTGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCGTg > 3:341981/1‑148 (MQ=255) aTGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCGTg > 3:347418/1‑148 (MQ=255) aTGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCGTg > 3:262633/1‑148 (MQ=255) aTGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCGTGc < 4:291351/149‑1 (MQ=255) aTGGAGCAGCGTATGAGTGAAACCGCGCAAGGTCTTCACGACAGCAACGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCGTg > 6:55326/1‑148 (MQ=255) | ACCTTCCACGCCTGGTCACGGCCCACGCTGCAGCGAAAGATATCCAGGCAGAAAATGCCGCCAAGAACCTGCCCATTCCGCTGCATCCAGGAGCAGCGAGGTACTTCAAGGAGAAAAACCTGCTCCCCTGATGACATTCCTGAGCCATGGAGCAGCGTATGAGTGATACCGCGCAAGGTCTTCACGCCAGCACCGATCGCTGGCCTGCCGCGCTTTTTGCCGTGGCATTGGTCTTTTCGGTTTTCCAGATCGCCACGGCGGCCTTCCCCCTGATTTCCACCCAAGTACTGCGTGC > NC_002947/4461355‑4461649 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |