New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 52028	56 (0.950)	4 (0.070)	3/248	NT	6.8%	intergenic (‑39/‑366)	czcC‑I/opdT‑I	cobalt‑zinc‑cadmium resistance protein/tyrosine‑specific outer membrane porin D
	?	NC_002947	= 52046	56 (1.000)					intergenic (‑57/‑348)	czcC‑I/opdT‑I	cobalt‑zinc‑cadmium resistance protein/tyrosine‑specific outer membrane porin D

TTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/51878‑52028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttggcAGCTGTTTCGGCGTTCTCGCCAAGCTTTATCGAAGTTTGTGCACGAGGACCATCAAAGTGCCCCGGTATAACCGCAATGTCTTACCCAAGACCCCCGTCTCGCCCTGGAAGATCGCTGCACTCTGTGCAGTCATCTCTGGGTTGATG  <  NC_002947/52046‑51900                                                                                                                                                                                                                                                                                                            TTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTG                                                                                                                                                       <  4:294765/149‑1    GGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGC                                                                                                                                                     <  2:36516/148‑1     GGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGC                                                                                                                                                     >  7:226691/1‑147             ttcgAGGCGCCGTCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCAGCTGTTTCG                                                                                                                                           >  4:321299/5‑149                                  cccgatCTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCAGCTGTTTCGGCGTTCTCGCCAAGCTTTAT                                                                                                                       <  7:3416/142‑1                                       ACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCAGCTGTTTCGGCGTTCTCGCCAAGCTTTATCGAAGT                                                                                                                 <  3:321299/149‑1                                           CACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGCAGCTGTTTCGGCGTTCTCGCCAAGCTTTAT                                                                                                                       >  8:3416/1‑139                                                                                                                                                      GCAGCTGTTTCGGCGTTCTCGCCAAGCTTTATCGAAGTTTGTGCACGAGGACCATCAAAGTGCCCCGGTATAACCGCAATGTCTTACCCAAGACCCCCGTCTCGCCCTGGAAGATCGCTGCACTCTGTGCAGTCATCTCTGGGTTGATG  >  3:277721/1‑149                                                                                                                                                                                                                                                                                                            TTTGGGCAAGGGCTGCAGGCGCCATCAACCCAGAGATGACTGCACAGAGTGCAGCGATCTTCCAGGGCGAGACGGGGGTCTTGGGTAAGACATTGCGGTTATACCGGGGCACTTTGATGGTCCTCGTGCACAAACTTCGATAAAGCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/51878‑52028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttggcAGCTGTTTCGGCGTTCTCGCCAAGCTTTATCGAAGTTTGTGCACGAGGACCATCAAAGTGCCCCGGTATAACCGCAATGTCTTACCCAAGACCCCCGTCTCGCCCTGGAAGATCGCTGCACTCTGTGCAGTCATCTCTGGGTTGATG  <  NC_002947/52046‑51900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.