New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 283647	62 (1.050)	6 (0.110)	4/254	NT	9.4%	coding (1098/2004 nt)	betT‑II	choline/carnitine/betaine transporter
	?	NC_002947	= 283670	56 (0.980)					coding (1121/2004 nt)	betT‑II	choline/carnitine/betaine transporter

ACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCCCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/283513‑283647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgCTGTTGCCGAAGATCGACATCCACGCCAGGGTGAAGCCCAGCGGAATCAGCAGCACGCCAAAGACGAACTCGCGGATGGTACGGCCACGGGAGATGCGGGCGATGAACAGGCCCACGAACGGCGCCCAGGCAATCCACCAGGCCCAG  <  NC_002947/283670‑283524                                                                                                                                                                                                                                                                                            ACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCCCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGCTGTTGCCG                                                                                                                                            >  5:226939/1‑144                 CCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCCCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGCTGTTGCCGAAGATCGACATCCACGCCAGG                                                                                                                       <  6:226939/149‑1                                                CCTGTTCATCGCCCGCATCTCCCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGCTGTTGCCGAAGATCGACATCCACGCCAGG                                                                                                                       >  7:297608/1‑118                                                CCTGTTCATCGCCCGCATCTCCCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGCTGTTGCCGAAGATCGACATCCACGCCAGG                                                                                                                       <  8:297608/118‑1                                                                   TCCCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGCTGTTGCCGAAGATCGACATCCAGGCCAGG                                                                                                                       >  7:98482/1‑99                                                                   TCCCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGCTGTTGCCGAAGATCGACATCCACGCCAGG                                                                                                                       <  8:98482/99‑1                                                                                                                                     GCGCTGTTGCCGAAGATCGACATCCACGCCAGGGTGAAGCCCAGCGGAATCAGCAGCACGCCAAAGACGAACTCGCGGATGGTACGGCCACGGGAGATGCGGGCGATGAACAGGCCCACGAACGGCGCCCAGGCAATCCACCAGGCCCA   <  3:42966/149‑1                                                                                                                                      CGCTGTTGCCGAAGATCGACATCCACGCCAGGGTGAAGCCCAGCGGAATCAGCAGCACGCCAAAGACGAACTCGCGGATGGTACGGCCACGGGAGATGCGGGCGATGAACAGGCCCACGAACGGCGCCCAGGCAATCCACCAGGCCCAG  <  6:205686/149‑1                                                                                                                                                                                                                                                                                            ACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCCCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/283513‑283647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgCTGTTGCCGAAGATCGACATCCACGCCAGGGTGAAGCCCAGCGGAATCAGCAGCACGCCAAAGACGAACTCGCGGATGGTACGGCCACGGGAGATGCGGGCGATGAACAGGCCCACGAACGGCGCCCAGGCAATCCACCAGGCCCAG  <  NC_002947/283670‑283524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.