New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	478261 =	55 (0.930)	8 (0.180)	5/202	NT	18.7%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478356 =	27 (0.590)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase

GACCGGTCAGGCACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/478434‑478261 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggag‑cgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGG  >  NC_002947/478356‑478497                                                                                                                                                                                                                                                                                                                               GACCGGTCAGGCACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCCCAACTACAGGGGGCACACATAACAGGTTGGGCTCAACCCGTCCTAG                                                                                                                                                                           >  3:34609/1‑148  ACCGGTCAGGCACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGA                                                                                                                                                                         <  2:85717/149‑1    CGGTCAGGCACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCAGAGCCCGTCGTAGGAG‑C                                                                                                                                                                      >  7:273745/1‑149      GTCAGGCACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGG                                                                                                                                                                    <  1:323916/149‑1       TCAGGCACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGG                                                                                                                                                                   <  5:269781/149‑1       TCAGGCACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGGTGGGCTCAGCCCGTCGTAGGAG‑CGGG                                                                                                                                                                   <  3:37896/149‑1         AGGCACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTAGGGCTCAGCCCGTCGTAGGAG‑CGGGTT                                                                                                                                                                 >  6:11389/1‑149            CACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTAC                                                                                                                                                              <  3:297791/149‑1             ACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTGGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACC                                                                                                                                                             <  5:11389/149‑1             ACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAAACCGCGCCTACACGGGGCCCACCTCAGAGGTTGGGGGCAGCCCGGCGGAGGCGCCGGGTTTAC                                                                                                                                                              >  3:211012/1‑149              CTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCC                                                                                                                                                            <  5:119667/149‑1               TGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTT                                                                                                                                                                 <  5:38850/143‑1               TGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTT                                                                                                                                                                 >  6:38850/1‑143                   ctAAGCACGCAAAGGTCAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACCGGGGGCACACATCCGCGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAA                                                                                                                                                       <  8:68067/147‑1                    GAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTA                                                                                                                                                                            <  5:346602/128‑1                    GAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTA                                                                                                                                                                            >  6:346602/1‑128                         ACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTTGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCC                                                                                                                                                 >  6:124558/1‑149                           TCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAA                                                                                                                                                       >  8:255738/1‑141                           TCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAA                                                                                                                                                       <  7:255738/141‑1                                                                                        TCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGATAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGC                                                                                  >  6:156464/1‑149                                                                                             GGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGC                                                                                                        >  5:206618/1‑122                                                                                             GGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGC                                                                                                        <  6:206618/122‑1                                                                                                     CGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGATAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACC                                                                     >  1:29772/1‑149                                                                                                      GCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGATAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCG                                                                    <  5:156464/149‑1                                                                                                            ACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGC                                                              >  2:192349/1‑149                                                                                                                                          GCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGC                                                                                       >  4:273809/1‑94                                                                                                                                          GCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGC                                                                                       <  3:273809/94‑1                                                                                                                                                  TAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCC                                                                          >  8:47810/1‑99                                                                                                                                                  TAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCC                                                                          <  7:47810/99‑1                                                                                                                                                   ttgctggGGGTTTCCCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGC                          <  4:167815/140‑1                                                                                                                                                     GAG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGC                     <  5:359946/149‑1                                                                                                                                                     GAG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCA                                                                               <  4:281514/91‑1                                                                                                                                                     GAG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCA                                                                               >  3:281514/1‑91                                                                                                                                                      AG‑CGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCC                    >  5:314100/1‑149                                                                                                                                                            GTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGC               >  4:261107/1‑149                                                                                                                                                               TACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTG             <  6:155948/148‑1                                                                                                                                                                ACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACAGCCACCGCTCGCGCCGCCGCTGCTGCG           >  5:133333/1‑149                                                                                                                                                                 CCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGC          >  1:277590/1‑149                                                                                                                                                                     CGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCG      <  6:133333/149‑1                                                                                                                                                                       AAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCA    <  2:6190/149‑1                                                                                                                                                                       AAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCA    <  1:192349/149‑1                                                                                                                                                                        AGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGGTCACCTTTGAGTGCTGCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAG   <  6:275891/149‑1                                                                                                                                                                         GAGGCCGATAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGG  <  2:29772/149‑1                                                                                                                                                                                                                                                                                                                               GACCGGTCAGGCACTGGGCGAAGCACTCAAAGGTGAACGGCTGAAAGCGCTCGAGGCTTACCAGCGCGGTTAGACCTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGCACACATCAGAGGTTGGGCTCAGCCCGTCGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/478434‑478261 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggag‑cgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGG  >  NC_002947/478356‑478497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.